Importance sampling and the two-locus model with subdivided population structure

DOI10.1239/AAP/1214950213MaRDI QIDQ3516399zbMATH OpenOpenAlexWikidataFDO

Authors Paul A. Jenkins, Yun S. Song, Robert Griffiths

Publication date 5 August 2008

Published in Advances in Applied Probability (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1239/aap/1214950213

zbMATH Keywords

coalescent processdiffusion processimportance samplingmigrationrecombinationsubdivided population

Mathematics Subject Classification ID

Stopping times; optimal stopping problems; gambling theory (60G40) Optimal stopping in statistics (62L15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Recommendations

• Importance sampling on coalescent histories. II: Subdivided population models
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Cites work

• A note on the accuracy of PAC-likelihood inference with microsatellite data
• Ancestral inference in population genetics
• Importance sampling on coalescent histories. I
• Importance sampling on coalescent histories. II: Subdivided population models
• Inference from gene trees in a subdivided population
• Inference in Molecular Population Genetics
• On the two-locus sampling distribution
• Simulating probability distributions in the coalescent
• The Bayesian Paradigm and Tree Diagrams with Applications in Genetics

Cited in

(16)

• Inference and rare event simulation for stopped Markov processes via reverse-time sequential Monte Carlo
• A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning
• Asymptotic behaviour of sampling and transition probabilities in coalescent models under selection and parent dependent mutations
• Bayesian nonparametric analysis of Kingman's coalescent
• Closed-form asymptotic sampling distributions under the coalescent with recombination for an arbitrary number of loci
• Computational inference beyond Kingman's coalescent
• Padé approximants and exact two-locus sampling distributions
• Importance sampling on coalescent histories. I
• Importance sampling on coalescent histories. II: Subdivided population models
• Importance sampling for backward SDEs
• Asymptotic sampling distributions made easy: loose linkage in the ancestral recombination graph
• Large-sample analysis of cost functionals for inference under the coalescent
• Sampling probabilities, diffusions, ancestral graphs, and duality under strong selection
• A sequentially Markov conditional sampling distribution for structured populations with migration and recombination
• On the two-locus sampling distribution
• An asymptotic sampling formula for the coalescent with recombination

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