Demographic inference under the coalescent in a spatial continuum

DOI10.1101/042135MaRDI QIDQ2362546zbMATH OpenOpenAlexWikidataFDO

Authors Stéphane Guindon, Hongbin Guo, David Welch

Publication date 10 July 2017

Published in Theoretical Population Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1016/j.tpb.2016.05.002

zbMATH Keywords

demographic inferencepopulation geneticsstructured coalescent

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Population dynamics (general) (92D25)

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Cites work

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• Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
• Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
• Modelling evolution in a spatial continuum
• The coalescent
• The coalescent and genealogical process in geographically structured population
• The spatial lambda-Fleming-Viot process: an event-based construction and a lookdown representation

Cited in

(12)

• Finite population total evolution estimation using auxciliary information: a regression spline approach.
• Inference for population dynamics in the Neolithic period
• Rate of coalescence of lineage pairs in the spatial \(\varLambda\)-Fleming-Viot process
• Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
• The Coalescent in Peripatric Metapopulations
• On the enumeration of leaf-labeled increasing trees with arbitrary node-degree
• Demographic inference for spatially heterogeneous populations using long shared haplotypes
• On the connections between the spatial Lambda-Fleming-Viot model and other processes for analysing geo-referenced genetic data
• Mathematical properties of the agent-based model of extinction -- recolonization for population genetics
• Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
• The coalescent and genealogical process in geographically structured population
• The spatial -coalescent

Describes a project that uses

Uses Software

• fastDNAml
• SpaceMix
• BEAST

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