Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks

DOI10.1016/J.TPB.2013.03.001MaRDI QIDQ743269zbMATH OpenOpenAlexWikidataFDO

Authors Jerome Kelleher, N. H. Barton, Alison Etheridge, A. Véber

Publication date 23 September 2014

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2013.03.001

zbMATH Keywords

inferencerecombinationspatial structuregene flow\(F\)-statisticsidentity in state

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Recommendations

• Spatial subdivision of populations and estimates of genetic variation
• Multilocus estimation of genetic structure within populations
• Inference from the stationary distribution of allele frequencies in a family of Wright-Fisher models with two levels of genetic variability
• Spatial autocorrelation for subdivided populations with invariant migration schemes
• Demographic inference under the coalescent in a spatial continuum

Cites work

• scientific article; zbMATH DE number 5275955 (Why is no real title available?)
• scientific article; zbMATH DE number 3048438 (Why is no real title available?)
• A new model for evolution in a spatial continuum
• Coalescent theory. An introduction
• Genetic hitchhiking in spatially extended populations
• Large scale behaviour of the spatial \(\varLambda\)-Fleming-Viot process
• Maximum likelihood estimation of a migration matrix and effective population sizes in \(n\) subpopulations by using a coalescent approach
• Neutral evolution in spatially continuous populations.
• Probability Models for DNA Sequence Evolution
• Random walk: A modern introduction
• Speciation and the shifting balance in a continuous population
• The distribution of the distance between random points
• The spatial \(\Lambda\)-Fleming-Viot process on a large torus: genealogies in the presence of recombination

Cited in

(11)

• Demographic inference under the coalescent in a spatial continuum
• Full likelihood inference from the site frequency spectrum based on the optimal tree resolution
• Spread of pedigree versus genetic ancestry in spatially distributed populations
• Editorial: Coalescent theory has many new branches
• Collision probabilities for AFLP bands, with an application to simple measures of genetic similarity
• Coalescent simulation in continuous space: algorithms for large neighbourhood size
• On spatial coalescents with multiple mergers in two dimensions
• Testing for population decline using maximal linkage disequilibrium blocks
• The spatial lambda-Fleming-Viot process: an event-based construction and a lookdown representation
• Stochastic partial differential equations describing neutral genetic diversity under short range and long range dispersal
• The stepping stone model in a random environment and the effect of local heterogeneities on isolation by distance patterns

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