Fitting stochastic epidemic models to gene genealogies using linear noise approximation

DOI10.1214/21-AOAS1583MaRDI QIDQ2686013zbMATH OpenFDO

Authors Mingwei Tang, Gytis Dudas, Trevor Bedford, Vladimir N. Minin

Publication date 24 February 2023

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1902.08877

zbMATH Keywords

coalescentEbola virusphylodynamicsstate-space modelsusceptible-infectious-recovered model

Mathematics Subject Classification ID

Applications of statistics (62Pxx)

Cites work

• A general framework for the parametrization of hierarchical models
• Fast sampling of Gaussian Markov random fields
• Gaussian Markov Random Fields
• Gaussian process approximations for fast inference from infectious disease data
• Gaussian process-based Bayesian nonparametric inference of population size trajectories from gene genealogies
• scientific article; zbMATH DE number 3523369 (Why is no real title available?)
• scientific article; zbMATH DE number 3806623 (Why is no real title available?)
• Inference for reaction networks using the linear noise approximation
• Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
• Modeling infectious diseases in humans and animals
• Solutions of ordinary differential equations as limits of pure jump markov processes
• The coalescent

Cited in

(1)

• A statistical model for genetic mapping of viral infection by integrating epidemiological behavior

Describes a project that uses

Uses Software

• GMRFLib
• BEAST

This page was built for publication: Fitting stochastic epidemic models to gene genealogies using linear noise approximation

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2686013)