Fitting stochastic epidemic models to gene genealogies using linear noise approximation

DOI10.1214/21-AOAS1583MaRDI QIDQ2686013

Vladimir N. Minin, Trevor Bedford, Gytis Dudas, Mingwei Tang

Publication date: 24 February 2023

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1902.08877

zbMATH Keywords

coalescentstate-space modelEbola virussusceptible-infectious-recovered modelphylodynamics

Mathematics Subject Classification ID

Applications of statistics (62Pxx)

Uses Software

• GMRFLib
• BEAST

Cites Work

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• Fast Sampling of Gaussian Markov Random Fields
• A general framework for the parametrization of hierarchical models
• The coalescent
• Gaussian process approximations for fast inference from infectious disease data
• Gaussian Markov Random Fields
• Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies
• Inference for reaction networks using the linear noise approximation
• Solutions of ordinary differential equations as limits of pure jump markov processes
• Limit theorems for sequences of jump Markov processes approximating ordinary differential processes