Gaussian Process‐Based Bayesian Nonparametric Inference of Population Size Trajectories from Gene Genealogies

DOI10.1111/biom.12003zbMath1274.62852arXiv1112.4138OpenAlexW2102236644WikidataQ42989213 ScholiaQ42989213MaRDI QIDQ4919553

Vladimir N. Minin, Julia A. Palacios

Publication date: 14 May 2013

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1112.4138

zbMATH Keywords

thinningpoint processcoalescentdata augmentationdoubly intractable distribution

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Nonparametric estimation (62G05) Population dynamics (general) (92D25) Nonparametric inference (62G99)

Related Items (8)

Statistical challenges in tracking the evolution of SARS-CoV-2 ⋮ Optimal point process filtering and estimation of the coalescent process ⋮ Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2 ⋮ Non-parametric estimation of population size changes from the site frequency spectrum ⋮ Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting ⋮ Rate-optimal Bayesian intensity smoothing for inhomogeneous Poisson processes ⋮ Fitting stochastic epidemic models to gene genealogies using linear noise approximation ⋮ A parametric interpretation of Bayesian nonparametric inference from gene genealogies: linking ecological, population genetics and evolutionary processes

Uses Software

• GMRFLib
• BEAST
• BEAUti
• MUSCLE

Cites Work

• Unnamed Item
• Simulation of nonhomogeneous poisson processes by thinning
• Bayesian mixture modeling for spatial Poisson process intensities, with applications to extreme value analysis
• The coalescent
• An algorithm for nonparametric Bayesian estimation of a Poisson intensity
• A Kernel Method for Smoothing Point Process Data
• Analyzing point processes subjected to random deletions
• On Lewis' simulation method for point processes
• Log Gaussian Cox Processes
• Adaptive Rejection Sampling for Gibbs Sampling
• Integrability of Expected Increments of Point Processes and a Related Random Change of Scale
• Statistical models based on counting processes

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