A representation-theoretic approach to the calculation of evolutionary distance in bacteria

DOI10.1088/1751-8121/aa7d60zbMath1377.92064arXiv1612.06035MaRDI QIDQ5364953

Andrew R. Francis, Peter D. Jarvis, Jeremy G. Sumner

Publication date: 29 September 2017

Published in: Journal of Physics A: Mathematical and Theoretical (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1612.06035

zbMATH Keywords

maximum likelihood; group theory; genome rearrangement; phylogenetics; bacteria

Mathematics Subject Classification ID

92D15: Problems related to evolution

92D10: Genetics and epigenetics

Related Items

Bacterial phylogeny in the Cayley graph, An algebraic model for inversion and deletion in bacterial genome rearrangement, Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics, Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach, A new algebraic approach to genome rearrangement models, A mean first passage time genome rearrangement distance, Maximum likelihood estimates of pairwise rearrangement distances

Uses Software

• SageMath
• PhyML
• BEAST

Cites Work

• An algebraic view of bacterial genome evolution
• Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics
• Lie Markov models
• Estimating the expected reversal distance after a fixed number of reversals
• Maximum likelihood estimates of pairwise rearrangement distances
• Group-theoretic models of the inversion process in bacterial genomes
• Transforming cabbage into turnip
• Asynchronous Distance between Homologous DNA Sequences
• Model Selection and Multimodel Inference
• Computing Isotypic Projections with the Lanczos Iteration
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