Lie Markov models
From MaRDI portal
Publication:1784017
DOI10.1016/j.jtbi.2011.12.017zbMath1397.92515arXiv1105.4680OpenAlexW2132775530WikidataQ48018821 ScholiaQ48018821MaRDI QIDQ1784017
Peter D. Jarvis, Jesús Fernández-Sánchez, Jeremy G. Sumner
Publication date: 26 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1105.4680
Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)
Related Items (23)
Lie Algebra Solution of Population Models Based on Time-Inhomogeneous Markov Chains ⋮ Quantum channel simulation of phylogenetic branching models ⋮ Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model ⋮ The Wei-Norman method for the infinite-server queue with phase-type arrivals ⋮ Embeddability of Kimura 3ST Markov matrices ⋮ On equal-input and monotone Markov matrices ⋮ Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants ⋮ The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives ⋮ Analytical time-dependent distributions for two common signaling systems ⋮ Uniformization Stable Markov Models and Their Jordan Algebraic Structure ⋮ A representation-theoretic approach to the calculation of evolutionary distance in bacteria ⋮ MULTIPLICATIVELY CLOSED MARKOV MODELS MUST FORM LIE ALGEBRAS ⋮ Phylosymmetric algebras: mathematical properties of a new tool in phylogenetics ⋮ The model-specific Markov embedding problem for symmetric group-based models ⋮ Lie-Markov models derived from finite semigroups ⋮ Lie Markov models with purine/pyrimidine symmetry ⋮ ADVENTURES IN INVARIANT THEORY ⋮ Dimensional reduction for the general Markov model on phylogenetic trees ⋮ Lie geometry of \(2\times 2\) Markov matrices ⋮ Notes on Markov embedding ⋮ Incorporating compositional heterogeneity into Lie Markov models for phylogenetic inference ⋮ Sampling and Statistical Physics via Symmetry ⋮ Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Relevant phylogenetic invariants of evolutionary models
- On the ideals of equivariant tree models
- Fourier calculus on evolutionary trees
- Recovering a tree from the leaf colourations it generates under a Markov model
- Modeling the covarion hypothesis of nucleotide substitution
- Markov invariants and the isotropy subgroup of a quartet tree
- Towards optimal distance functions for stochastic substitution models
- Markov invariants, plethysms, and phylogenetics
- On the convergence and optimization of the Baker-Campbell-Hausdorff formula
- The algebra of the general Markov model on phylogenetic trees and networks
- Introduction to group theory. Translated from the Russian. With a new chapter.
- Markov-type Lie groups in GL(n,R)
- On a Lie-theoretic approach to generalized doubly stochastic matrices and applications
- U(1) ×U(1) ×U(1) symmetry of the Kimura 3ST model and phylogenetic branching processes
- Model Selection and Multimodel Inference
- Naive Lie Theory
- Algebraic Statistics for Computational Biology
This page was built for publication: Lie Markov models
