| Publication | Date of Publication | Type |
|---|
On the algebra of equal-input matrices in time-inhomogeneous Markov flows
Documenta Mathematica | 2025-03-25 | Paper |
Embedding of Markov matrices for d 4
Journal of Mathematical Biology | 2024-08-06 | Paper |
Uniformization Stable Markov Models and Their Jordan Algebraic Structure
SIAM Journal on Matrix Analysis and Applications | 2024-01-04 | Paper |
| Embedding of Markov matrices for d\leqslant 4 | 2023-11-05 | Paper |
Rearrangement events on circular genomes
Bulletin of Mathematical Biology | 2023-10-24 | Paper |
Evaluation of the relative performance of the subflattenings method for phylogenetic inference
Bulletin of Mathematical Biology | 2023-03-07 | Paper |
Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
Journal of Physics A: Mathematical and Theoretical | 2023-01-04 | Paper |
On equal-input and monotone Markov matrices
Advances in Applied Probability | 2022-06-28 | Paper |
A new algebraic approach to genome rearrangement models
Journal of Mathematical Biology | 2022-05-20 | Paper |
Correction to: ``Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model''
Journal of Mathematical Biology | 2021-06-30 | Paper |
| A symmetry-inclusive algebraic approach to genome rearrangement | 2021-06-18 | Paper |
The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
Journal of Mathematical Biology | 2020-08-17 | Paper |
Notes on Markov embedding
Linear Algebra and its Applications | 2020-04-06 | Paper |
Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
Lie-Markov models derived from finite semigroups
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
Markov invariants and the isotropy subgroup of a quartet tree
Journal of Theoretical Biology | 2018-11-14 | Paper |
Markov invariants, plethysms, and phylogenetics
Journal of Theoretical Biology | 2018-10-16 | Paper |
Lie Markov models
Journal of Theoretical Biology | 2018-09-26 | Paper |
Multiplicatively closed Markov models must form Lie algebras
The ANZIAM Journal | 2018-03-29 | Paper |
| Circular genome rearrangement models: applying representation theory to evolutionary distance calculations | 2017-12-03 | Paper |
Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants
Journal of Mathematical Biology | 2017-11-08 | Paper |
A representation-theoretic approach to the calculation of evolutionary distance in bacteria
Journal of Physics A: Mathematical and Theoretical | 2017-09-29 | Paper |
Maximum likelihood estimates of pairwise rearrangement distances
Journal of Theoretical Biology | 2017-09-12 | Paper |
Maximum likelihood estimates of pairwise rearrangement distances
Journal of Theoretical Biology | 2017-09-12 | Paper |
Dimensional reduction for the general Markov model on phylogenetic trees
Bulletin of Mathematical Biology | 2017-07-28 | Paper |
Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
Journal of Mathematical Biology | 2016-08-23 | Paper |
Lie geometry of 2 2 Markov matrices
Journal of Theoretical Biology | 2015-10-13 | Paper |
Lie Markov models with purine/pyrimidine symmetry
Journal of Mathematical Biology | 2015-02-23 | Paper |
Adventures in invariant theory
The ANZIAM Journal | 2015-02-17 | Paper |
Tensor rank, invariants, inequalities, and applications
SIAM Journal on Matrix Analysis and Applications | 2013-12-13 | Paper |
The algebra of the general Markov model on phylogenetic trees and networks
Bulletin of Mathematical Biology | 2012-04-27 | Paper |
Using the tangle: A consistent construction of phylogenetic distance matrices for quartets
Mathematical Biosciences | 2007-02-19 | Paper |
Erratum: Entanglement invariants and phylogenetic branching
Journal of Mathematical Biology | 2006-10-27 | Paper |
Path integral formulation and Feynman rules for phylogenetic branching models
Journal of Physics A: Mathematical and General | 2006-03-09 | Paper |
Entanglement invariants and phylogenetic branching
Journal of Mathematical Biology | 2005-08-17 | Paper |
On the algebra of equal-input matrices in time-inhomogeneous Markov flows
(available as arXiv preprint) | N/A | Paper |
