Markov invariants and the isotropy subgroup of a quartet tree

DOI10.1016/j.jtbi.2009.01.021zbMath1402.92323arXiv0809.3070OpenAlexW2963626606WikidataQ51824893 ScholiaQ51824893MaRDI QIDQ1620821

Peter D. Jarvis, Jeremy G. Sumner

Publication date: 14 November 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0809.3070

zbMATH Keywords

characterstreesbranching rulesphylogenetics

Mathematics Subject Classification ID

Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)

Related Items (9)

Do tree split probabilities determine the branch lengths? ⋮ Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model ⋮ Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants ⋮ An algebraic analysis of the two state Markov model on tripod trees ⋮ ADVENTURES IN INVARIANT THEORY ⋮ Dimensional reduction for the general Markov model on phylogenetic trees ⋮ Lie Markov models ⋮ The Rise of Statistical Phylogenetics ⋮ Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics

Uses Software

• R

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Rooted trees and iterated wreath products of cyclic groups
• Invariants of phylogenies in a simple case with discrete states
• Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.
• Recovering a tree from the leaf colourations it generates under a Markov model
• Phylogenetic invariants for the general Markov model of sequence mutation
• Markov invariants, plethysms, and phylogenetics
• Conjugacy classes of the automorphism group of a tree
• Invariants of some probability models used in phylogenetic inference
• Lie groups. An approach through invariants and representations
• Model Selection and Multimodel Inference

This page was built for publication: Markov invariants and the isotropy subgroup of a quartet tree