The rise of statistical phylogenetics

DOI10.1111/ANZS.12035MaRDI QIDQ2802842zbMATH OpenOpenAlexWikidataFDO

Authors Barbara R. Holland

Publication date 27 April 2016

Published in Australian \& New Zealand Journal of Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/anzs.12035

zbMATH Keywords

maximum likelihoodphylogeneticsgoodness-of-fitphylogenetic networksstochastic modelsphylogenetic treessequence evolutionmolecular phylogenetics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Research exposition (monographs, survey articles) pertaining to statistics (62-02)

Recommendations

• Statistical Methods in Phylogenetic and Evolutionary Inferences
• Statistics for phylogenetic trees
• Role of statistical science in molecular phylogenetic inference
• Statistical approach to tests involving phylogenies
• Complex statistical modelling for phylogenetic inference
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• The Mathematics of Phylogenomics

Cites work

• scientific article; zbMATH DE number 1974604 (Why is no real title available?)
• scientific article; zbMATH DE number 1782877 (Why is no real title available?)
• Bootstrap methods: another look at the jackknife
• Identifiability of large phylogenetic mixture models
• Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
• Invariants of some probability models used in phylogenetic inference
• Links between maximum likelihood and maximum parsimony under a simple model of site substitution
• Markov invariants and the isotropy subgroup of a quartet tree
• Phylogenetic invariants for the general Markov model of sequence mutation
• Statistical Inference of Phylogenies
• Statistical modeling: The two cultures. (With comments and a rejoinder).
• Statistics for phylogenetic trees

Cited in

(5)

• Role of statistical science in molecular phylogenetic inference
• The phylogenetic effective sample size and jumps
• A Mathematical Primer of Molecular Phylogenetics
• Phylogenetic Ornstein-Uhlenbeck regression curves
• Statistical Methods in Phylogenetic and Evolutionary Inferences

Describes a project that uses

Uses Software

• MODELTEST
• RAxML
• fastDNAml

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