Links between maximum likelihood and maximum parsimony under a simple model of site substitution
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Cites work
- scientific article; zbMATH DE number 791368 (Why is no real title available?)
- scientific article; zbMATH DE number 3290993 (Why is no real title available?)
- scientific article; zbMATH DE number 3366301 (Why is no real title available?)
- Counting bichromatic evolutionary trees
- Decompositions of leaf-colored binary trees
- Distributions on bicoloured binary trees arising from the principle of parsimony
- Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters
- On weighted multiway cuts in trees
- Taxonomy with confidence
Cited in
(36)- On the accuracy of ancestral sequence reconstruction for ultrametric trees with parsimony
- Analytic solutions of maximum likelihood on forks of four taxa
- Efficient estimation of the accuracy of the maximum likelihood method for ancestral state reconstruction
- Sufficient conditions for two tree reconstruction techniques to succeed on sufficiently long sequences
- Cases in which ancestral maximum likelihood will be confusingly misleading
- The shape of the one-dimensional phylogenetic likelihood function
- Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
- Finding a maximum likelihood tree is hard
- Two further links between MP and ML under the Poisson model.
- A basic limitation on inferring phylogenies by pairwise sequence comparisons
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- MULTIPLE COMPARISONS OF LOG-LIKELIHOODS AND COMBINING NONNESTED MODELS WITH APPLICATIONS TO PHYLOGENETIC TREE SELECTION
- On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model
- Most parsimonious likelihood exhibits multiple optima for compatible characters
- Statistics for phylogenetic trees
- Ancestral state reconstruction with large numbers of sequences and edge-length estimation
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Hadamard conjugation: an analytic tool for phylogenetics
- scientific article; zbMATH DE number 67613 (Why is no real title available?)
- Analytic Solutions for Three-Taxon MLMC Trees with Variable Rates Across Sites
- Statistical inconsistency of maximum parsimony for \(k\)-tuple-site data
- Phylogenetic estimation with partial likelihood tensors
- Revisiting an equivalence between maximum parsimony and maximum likelihood methods in phylogenetics
- Sufficient condition for root reconstruction by parsimony on binary trees with general weights
- Inferring ancestral sequences in taxon-rich phylogenies
- Finding a most parsimonious or likely tree in a network with respect to an alignment
- Chromtree: maximum likelihood estimation of chromosomal phylogenies
- Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
- Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
- On the quirks of maximum parsimony and likelihood on phylogenetic networks
- Maximum parsimony on subsets of taxa
- Non-hereditary maximum parsimony trees
- Comparing the likelihood functions of phylogenetic trees
- The rise of statistical phylogenetics
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
- Consistency of a phylogenetic tree maximum likelihood estimator
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