Efficient estimation of the accuracy of the maximum likelihood method for ancestral state reconstruction

DOI10.1007/S10878-009-9261-6MaRDI QIDQ491208zbMATH OpenOpenAlexFDO

Authors Bin Ma, Louxin Zhang

Publication date 24 August 2015

Published in Journal of Combinatorial Optimization (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10878-009-9261-6

zbMATH Keywords

ancestral state reconstructionmaximum likelihood methodpolynomial time approximationreconstruction accuracy

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

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Cites work

• Broadcasting on trees and the Ising model.
• Finding a maximum likelihood tree is hard
• Inverting random functions
• Statistical decision theory and Bayesian analysis. 2nd ed

Cited in

(8)

• Multi-task learning improves ancestral state reconstruction
• Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
• The impact and interplay of long and short branches on phylogenetic information content
• Choosing the best ancestral character state reconstruction method
• Ancestral state reconstruction with large numbers of sequences and edge-length estimation
• Faster exact computation of rSPR distance
• A comparison of ancestral state reconstruction methods for quantitative characters
• Analyzing the fitch method for reconstructing ancestral states on ultrametric phylogenetic trees

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