Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
DOI10.1016/J.JTBI.2011.04.005zbMATH Open1397.92496OpenAlexW2002840130WikidataQ51600125 ScholiaQ51600125MaRDI QIDQ1783523FDOQ1783523
Authors: Mark Holder, Mike Steel 
Publication date: 21 September 2018
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.04.005
Recommendations
- Links between maximum likelihood and maximum parsimony under a simple model of site substitution
- Phylogenetic Inference: Linear Invariants and Maximum Likelihood
- Two further links between MP and ML under the Poisson model.
- Distance measures in terms of substitution processes
- A basic limitation on inferring phylogenies by pairwise sequence comparisons
consistencymaximum likelihoodphylogenetic inferencecounting processesdistance-based phylogenetic inference
Cites Work
- Title not available (Why is that?)
- The performance of neighbor-joining methods of phylogenetic reconstruction
- Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.
- Retractions of finite distance functions onto tree metrics
- A molecular sequence metric and evolutionary trees
- Title not available (Why is that?)
- Toward extracting all phylogenetic information from matrices of evolutionary distances
- Counting labeled transitions in continuous-time Markov models of evolution
Cited In (8)
- Phylogenetic estimation with partial likelihood tensors
- Detection of Adaptive Shifts on Phylogenies by using Shifted Stochastic Processes on a Tree
- A basic limitation on inferring phylogenies by pairwise sequence comparisons
- Estimating the bias on the LogDeterminant transformation for evolutionary trees
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
- Links between maximum likelihood and maximum parsimony under a simple model of site substitution
- Improving tree probability estimation with stochastic optimization and variance reduction
- Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts
Uses Software
This page was built for publication: Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1783523)
