PAUP*
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Cited in
(only showing first 100 items - show all)- An improved bound on the maximum agreement subtree problem
- Reconstructing ancestral character states under Wagner parsimony
- Jungles: A new solution to the host/parasite phylogeny reconciliation problem
- Phylogenetic analysis of nucleotide sequences: An algebraic approach
- The agreement metric for labeled binary trees
- A tree \(\cdot\) a window \(\cdot\) a hill; generalization of nearest- neighbor interchange in phylogenetic optimization
- ASTRAL-Pro
- FastMulRFS
- A more efficient algorithm for MPR problems in phylogeny
- Lattice-theoretic properties of MPR-posets in phylogeny
- ReCombinatorics
- EdiPy
- On characteristics of ancestral character-state reconstructions under the accelerated transformation optimization
- Phylogenetic estimation with partial likelihood tensors
- ape
- Time-dependent-asymmetric-linear-parsimonious ancestral state reconstruction
- Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations
- Identifiability and reconstructibility of species phylogenies under a modified coalescent
- Clustering binary oligonucleotide fingerprint vectors for DNA clone classification analysis
- Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
- fastDNAml
- A distance measure based on binary character data and its application to phylogeny reconstruction
- PHYLIP
- MrBayes
- RAxML
- BIONJ
- Seq-Gen
- FlipCut
- EPoS
- PhySIC
- Bayesian-weighted triplet and quartet methods for species tree inference
- Notung
- Effects of discordance between species and gene trees on phylogenetic diversity conservation
- MEGA
- The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence
- Phylogenetics of artificial manuscripts
- Tumor classification using phylogenetic methods on expression data
- Gaphyl
- PhyML
- PAML
- Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
- Approximating geodesic tree distance
- 3DCoffee
- ClustalW
- On finding the Adams consensus tree
- The size of the character state space affects the occurrence and detection of homoplasy: modelling the probability of incompatibility for unordered phylogenetic characters
- SplitsTree
- BEAGLE
- BEAST
- DPRml
- pIQPNNI
- Inferring phylogenetic trees using answer set programming
- EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
- Reconstruction of large phylogenetic trees: a parallel approach
- Constructing rooted supertrees using distances
- DASACT
- NAST
- Clustal X
- Statalign
- Bali-phy
- PartTree
- GRAPPA
- RIATA-HGT
- r8s
- Algorithms in computational molecular biology. Techniques approaches and applications.
- A comparison of ancestral state reconstruction methods for quantitative characters
- Hierarchical latent class models for cluster analysis
- TreeOfTrees
- Characterizing local optima for maximum parsimony
- ASTRAL-II
- Dendroscope
- PROMALS
- OXBench
- iGTP
- BUCKy
- GRIMM
- Mtreemix
- trimAl
- Mauve
- ecceTERA
- \textsc{FlipCut} supertrees: towards matrix representation accuracy in polynomial time
- PhyloNetwork
- FastTree
- An axiomatic study of majority-rule \((+)\) and associated consensus functions on hierarchies
- UFBoot2
- ExaML
- RAxML-Light
- MOLPHY
- MetaPIGA
- GARLI
- Phylogeny.fr
- OMICtools
- Proteinortho
- GATC
- SuperTriplets
- SuperFine
- GIGA
- TreeFix
- L.U.St
- TNT
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