Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations
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Ornstein-Uhlenbeck processmigrationspecies interactionsphylogenetic comparative methodstrait evolution
Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10) Computational methods for problems pertaining to biology (92-08)
Abstract: The Ornstein-Uhlenbeck (OU) process plays a major role in the analysis of the evolution of phenotypic traits along phylogenies. The standard OU process includes drift and stabilizing selection and assumes that species evolve independently. However, especially in plants, there is ample evidence of hybridization and introgression during evolution. In this work we present a statistical approach with analytical solutions that allows for the inclusion of adaptation and migration in a common phylogenetic framework. We furthermore present a detailed simulation study that clearly indicates the adverse effects of ignoring migration. Similarity between species due to migration could be misinterpreted as very strong convergent evolution without proper correction for these additional dependencies. Our model can also be useful for studying local adaptation among populations within the same species. Finally, we show that our model can be interpreted in terms of ecological interactions between species, providing a general framework for the evolution of traits between "interacting" species or populations.
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Cites work
- scientific article; zbMATH DE number 3323598 (Why is no real title available?)
- A phylogenetic comparative method for studying multivariate adaptation
- Adaptive evolution of molecular phenotypes
- An introduction to stochastic differential equations
- On incomplete sampling under birth-death models and connections to the sampling-based coalescent
- Phase transition on the convergence rate of parameter estimation under an Ornstein-Uhlenbeck diffusion on a tree
- Phylogenetic confidence intervals for the optimal trait value
- Reconstructing ancestral character states under Wagner parsimony
Cited in
(10)- Modeling rate of adaptive trait evolution using Cox-Ingersoll-Ross process: an approximate Bayesian computation approach
- Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
- Linking micro and macroevolution in the presence of migration
- Analysis of a stochastic logistic model with diffusion and Ornstein–Uhlenbeck process
- Modeling correlated uncertainties in stochastic compartmental models
- Exact pathwise simulation of multi-dimensional Ornstein-Uhlenbeck processes
- Analysis of a stochastic Lotka–Volterra competitive system with infinite delays and Ornstein–Uhlenbeck process
- Graphical modeling of stochastic processes driven by correlated noise
- Evolving systems of stochastic differential equations
- Adaptive trait evolution in random environment
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