Reconstruction of large phylogenetic trees: a parallel approach

DOI10.1016/J.COMPBIOLCHEM.2005.06.003MaRDI QIDQ2500323zbMATH OpenOpenAlexWikidataFDO

Authors Zhihua Du, Feng Lin, Usman W. Roshan

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2005.06.003

zbMATH Keywords

Divide-and-conquerMaximum parsimonyMIMDParallelPhylogenetic tree

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Complexity and performance of numerical algorithms (65Y20) Problems related to evolution (92D15)

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Cites work

• Absolute convergence: True trees from short sequences
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Cited in

(14)

• Parallel implementation of DNAml program on message-passing architectures
• Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.
• Generating most parsimonious reconstructions on a tree: A generalization of the Farris-Swofford-Maddison method
• Building large phylogenetic trees on coarse-grained parallel machines
• ParBaum: Large-scale maximum likelihood-based phylogenetic analyses
• Adapting PAxML to the Hitachi SR8000-F1 Supercomputer
• scientific article; zbMATH DE number 2086792 (Why is no real title available?)
• Parallel Evolutionary Registration of Range Data
• Euro-Par 2004 Parallel Processing
• Adaptive memory programming: local search parallel algorithms for phylogenetic tree construc\-tion
• scientific article; zbMATH DE number 7651142 (Why is no real title available?)
• A scalable parallelization of the gene duplication problem
• Large scale multiple sequence alignment with simultaneous phylogeny inference
• Establishing a statistic model for recognition of steroid hormone response elements

Describes a project that uses

Uses Software

• Reveal
• fastDNAml
• PAUP*
• BIONJ
• Rec-I-DCM3

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