Reconstruction of large phylogenetic trees: a parallel approach

DOI10.1016/J.COMPBIOLCHEM.2005.06.003MaRDI QIDQ2500323zbMATH OpenOpenAlexWikidataFDO

Authors Zhihua Du, Feng Lin, Usman W. Roshan

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2005.06.003

zbMATH Keywords

Phylogenetic treeMIMDDivide-and-conquerParallelMaximum parsimony

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Complexity and performance of numerical algorithms (65Y20) Problems related to evolution (92D15)

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Cites work

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Cited in

(13)

• Generating most parsimonious reconstructions on a tree: A generalization of the Farris-Swofford-Maddison method
• Euro-Par 2004 Parallel Processing
• Adaptive memory programming: local search parallel algorithms for phylogenetic tree construc\-tion
• Parallel Evolutionary Registration of Range Data
• Molecular phylogenetics: parallelized parameter estimation and quartet puzzling.
• Building large phylogenetic trees on coarse-grained parallel machines
• Adapting PAxML to the Hitachi SR8000-F1 Supercomputer
• Establishing a statistic model for recognition of steroid hormone response elements
• ParBaum: Large-scale maximum likelihood-based phylogenetic analyses
• Large scale multiple sequence alignment with simultaneous phylogeny inference
• A scalable parallelization of the gene duplication problem
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Describes a project that uses

Uses Software

• Rec-I-DCM3
• BIONJ
• PAUP*
• fastDNAml
• Reveal

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