Tumor classification using phylogenetic methods on expression data

DOI10.1016/J.JTBI.2004.02.021MaRDI QIDQ2187663zbMATH OpenOpenAlexWikidataFDO

Authors Richard Desper, Alejandro A. Schäffer, Javed I. Khan

Publication date 3 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.02.021

zbMATH Keywords

breast cancergene expression datamicroarraysphylogenetic treessmall round blue cell tumorstumor classification

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50) Genetics and epigenetics (92D10)

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Cites work

• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• scientific article; zbMATH DE number 3782216 (Why is no real title available?)
• scientific article; zbMATH DE number 1945150 (Why is no real title available?)
• scientific article; zbMATH DE number 1945176 (Why is no real title available?)
• The changing science of machine learning

Cited in

(8)

• Estimating an oncogenetic tree when false negatives and positives are present
• A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data
• A graph spectrum based geometric biclustering algorithm
• Dynamic gene regulatory network reconstruction and analysis based on clinical transcriptomic data of colorectal cancer
• A probabilistic relaxation labeling framework for reducing the noise effect in geometric biclustering of gene expression data
• Pattern classification of phylogeny signals
• Event Models for Tumor Classification with SAGE Gene Expression Data
• MoTERNN: classifying the mode of cancer evolution using recursive neural networks

Describes a project that uses

Uses Software

• PHYLIP
• PAUP*

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