PAML
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swMATH10916MaRDI QIDQ22868FDOQ22868
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Official website: http://abacus.gene.ucl.ac.uk/software/paml.html
Cited In (only showing first 100 items - show all)
- Mathematical properties of some measures of evolutionary distance
- Comparing strategies to preserve evolutionary diversity
- Error detection and correction of gene trees
- Genetic codes as evolutionary filters: subtle differences in the structure of genetic codes result in significant differences in patterns of nucleotide substitution
- Phylogenetic analysis of DNA sequences based on fractional Fourier transform
- Aminoacyl-tRNA synthetase classes and groups in prokaryotes
- Visualizing codon usage within and across genomes: concepts and tools
- Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
- Multilocus phylogenetic analysis with gene tree clustering
- The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
- The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
- The limiting distribution of the effective population size of the ancestor of humans and chimpanzees
- Comparisons of d\(N\)/d\(S\) are time dependent for closely related bacterial genomes
- Power of the likelihood ratio test for models of DNA base substitution
- Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree
- Phylogenetic estimation with partial likelihood tensors
- Distributed and sequential algorithms for bioinformatics
- EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Ancestral sequence reconstruction for co-evolutionary models
- Bioinformatics and the Cell
- Computational model for analyzing the evolutionary patterns of the neuraminidase gene of influenza A/H1N1
- Modeling the effect of changing selective pressures on polymorphism and divergence
- Sun Grid Engine
- HAPLO
- fastDNAml
- MEGA4
- MrBayes
- PHYLIP
- RAxML
- PAUP*
- MAFFT
- MODELTEST
- Seq-Gen
- Notung
- MEGA
- PhyML
- ClustalW
- CAFE
- SplitsTree
- LAGAN
- Samtools
- Clustal X
- Rose
- AMADA
- DAMBE
- ESTAP
- GARSA
- CodonO
- SABmark
- PCAP
- InterProScan
- DendroPy
- TOUCAN
- YACOP
- kdetrees
- CodonPhyML
- INDELible
- PANTHER
- TOPAL
- ACUA
- PAL2NAL
- GIGA
- MultiPhyl
- TreeFix
- rbrothers
- Syn-SCAN
- TOPALi
- apTreeshape
- Electron
- Pline
- Datamonkey
- CpG island searcher
- cBrother
- XRate
- Distribution of distances between topologies and its effect on detection of phylogenetic recombination
- Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
- The EM algorithm and the rise of computational biology
- ALF
- HMMGEP
- TreeSAAP
- ADAPTSITE
- CLIFF
- ntCard
- CAIcal
- CodonW
- DAMBE7
- CodonTest
- FramePlot
- ExtRamp
- EasyCodeML
- GCUA
- FRESCo
- KAT
- JSpeciesWS
- INCA
- MACSE
- RevTrans
- stAIcalc
- TTA Lynx
This page was built for software: PAML
