PAML
From MaRDI portal
Cited in
(only showing first 100 items - show all)- OmniRPC
- EdiPy
- Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
- Classification of molecular sequence data using Bayesian phylogenetic mixture models
- Phylogenetic estimation with partial likelihood tensors
- HAPLO
- Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study
- Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree
- Comparing strategies to preserve evolutionary diversity
- Aminoacyl-tRNA synthetase classes and groups in prokaryotes
- Improved variance estimators for one- and two-parameter models of nucleotide substitution
- fastDNAml
- PHYLIP
- MEGA4
- MrBayes
- RAxML
- PAUP*
- MAFFT
- MODELTEST
- Seq-Gen
- Notung
- MEGA
- Phylogenetic analysis of DNA sequences based on fractional Fourier transform
- Genetic codes as evolutionary filters: subtle differences in the structure of genetic codes result in significant differences in patterns of nucleotide substitution
- The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
- Comparisons of dN/dS are time dependent for closely related bacterial genomes
- Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
- Mathematical properties of some measures of evolutionary distance
- PhyML
- Multilocus phylogenetic analysis with gene tree clustering
- ClustalW
- The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
- The limiting distribution of the effective population size of the ancestor of humans and chimpanzees
- SplitsTree
- CAFE
- EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
- LAGAN
- Samtools
- Clustal X
- Rose
- SABmark
- TOUCAN
- GARSA
- PCAP
- ESTAP
- YACOP
- AMADA
- DAMBE
- CodonO
- InterProScan
- DendroPy
- kdetrees
- PANTHER
- CodonPhyML
- INDELible
- TOPAL
- PAL2NAL
- ACUA
- GIGA
- TreeFix
- MultiPhyl
- rbrothers
- Syn-SCAN
- TOPALi
- apTreeshape
- Pline
- Electron
- Computational model for analyzing the evolutionary patterns of the neuraminidase gene of influenza A/H1N1
- Datamonkey
- CpG island searcher
- cBrother
- XRate
- Error detection and correction of gene trees
- Ancestral sequence reconstruction for co-evolutionary models
- Bioinformatics. Volume I. Data, sequence analysis, and evolution
- Power of the likelihood ratio test for models of DNA base substitution
- HMMGEP
- TreeSAAP
- CLIFF
- ADAPTSITE
- ntCard
- Distributed and sequential algorithms for bioinformatics
- KAT
- JSpeciesWS
- FramePlot
- DAMBE7
- INCA
- CodonW
- ExtRamp
- CAIcal
- GCUA
- stAIcalc
- FRESCo
- EasyCodeML
- MACSE
- RevTrans
- xREI
- ALF
- CodonTest
- TTA Lynx
This page was built for software: PAML
