| Publication | Date of Publication | Type |
|---|
0-1 laws for pattern occurrences in phylogenetic trees and networks
(available as arXiv preprint) | N/A | Paper |
Counting rankings of tree-child networks
Bulletin of Mathematical Biology | 2026-03-06 | Paper |
Predicting the depth of the most recent common ancestor of a random sample of k species: the impact of phylogenetic tree shape
Journal of Mathematical Biology | 2026-01-16 | Paper |
A dichotomy law for certain classes of phylogenetic networks
Bulletin of Mathematical Biology | 2025-10-13 | Paper |
Asymptotic enumeration of normal and hybridization networks via tree decoration
Bulletin of Mathematical Biology | 2025-07-28 | Paper |
Time and knowability in evolutionary processes
Philosophy of Science | 2025-03-26 | Paper |
Transformations to simplify phylogenetic networks
Bulletin of Mathematical Biology | 2025-01-13 | Paper |
0-1 laws for pattern occurrences in phylogenetic trees and networks
Bulletin of Mathematical Biology | 2024-07-15 | Paper |
Autocatalytic sets and chemical organizations: modeling self-sustaining reaction networks at the origin of life
New Journal of Physics | 2024-04-23 | Paper |
Phylogenetic network classes through the lens of expanding covers
Journal of Mathematical Biology | 2024-04-10 | Paper |
Combinatorial and stochastic properties of ranked tree‐child networks
Random Structures & Algorithms | 2023-10-12 | Paper |
The expected loss of feature diversity (versus phylogenetic diversity) following rapid extinction at the present
Journal of Mathematical Biology | 2023-09-15 | Paper |
Spaces of phylogenetic diversity indices: combinatorial and geometric properties
Bulletin of Mathematical Biology | 2023-08-08 | Paper |
Labellable phylogenetic networks
Bulletin of Mathematical Biology | 2023-05-17 | Paper |
Counting and optimising maximum phylogenetic diversity sets
Journal of Mathematical Biology | 2022-08-04 | Paper |
Defining phylogenetic networks using ancestral profiles
Mathematical Biosciences | 2021-11-08 | Paper |
Combinatorics of Polymer-Based Models of Early Metabolism
SIAM Journal on Discrete Mathematics | 2021-10-18 | Paper |
Conditions under which distributions of edge length ratios on phylogenetic trees can be used to order evolutionary events
Journal of Theoretical Biology | 2021-07-16 | Paper |
Modelling aspects of consciousness: a topological perspective
Journal of Theoretical Biology | 2021-06-14 | Paper |
Optimizing phylogenetic diversity under constraints
Journal of Theoretical Biology | 2020-11-05 | Paper |
Reconstructing pedigrees: a combinatorial perspective
Journal of Theoretical Biology | 2020-09-17 | Paper |
Complexity results for autocatalytic network models
Mathematical Biosciences | 2020-09-01 | Paper |
Random biochemical networks: the probability of self-sustaining autocatalysis
Journal of Theoretical Biology | 2020-07-16 | Paper |
Lambert and Stadler (2013): a unifying framework for modelling evolutionary trees
Theoretical Population Biology | 2020-06-04 | Paper |
Detecting autocatalytic, self-sustaining sets in chemical reaction systems
Journal of Theoretical Biology | 2020-06-03 | Paper |
Dynamics of a birth-death process based on combinatorial innovation
Journal of Theoretical Biology | 2020-04-03 | Paper |
Combinatorial properties of phylogenetic diversity indices
Journal of Mathematical Biology | 2020-02-21 | Paper |
A class of phylogenetic networks reconstructable from ancestral profiles
Mathematical Biosciences | 2019-10-10 | Paper |
Consistency of Bayesian inference of resolved phylogenetic trees
Journal of Theoretical Biology | 2019-05-14 | Paper |
Predicting the loss of phylogenetic diversity under non-stationary diversification models
Journal of Theoretical Biology | 2019-05-14 | Paper |
Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
Journal of Mathematical Biology | 2019-05-03 | Paper |
Species notions that combine phylogenetic trees and phenotypic partitions
Journal of Mathematical Biology | 2019-03-29 | Paper |
Phylogenetic flexibility via Hall-type inequalities and submodularity
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
Tree-based networks: characterisations, metrics, and support trees
Journal of Mathematical Biology | 2019-03-15 | Paper |
On the information content of discrete phylogenetic characters
Journal of Mathematical Biology | 2019-03-01 | Paper |
On the information content of discrete phylogenetic characters
Journal of Mathematical Biology | 2019-03-01 | Paper |
Comparing strategies to preserve evolutionary diversity
Journal of Theoretical Biology | 2019-02-18 | Paper |
Modelling the unpredictability of future biodiversity in ecological networks
Journal of Theoretical Biology | 2019-02-12 | Paper |
Identifying a species tree subject to random lateral gene transfer
Journal of Theoretical Biology | 2019-02-04 | Paper |
Clades, clans, and reciprocal monophyly under neutral evolutionary models
Theoretical Population Biology | 2018-12-05 | Paper |
Similarities as evidence for common ancestry: a likelihood epistemology
The British Journal for the Philosophy of Science | 2018-11-19 | Paper |
A basic limitation on inferring phylogenies by pairwise sequence comparisons
Journal of Theoretical Biology | 2018-11-08 | Paper |
Phylogenetic information complexity: is testing a tree easier than finding it?
Journal of Theoretical Biology | 2018-11-08 | Paper |
Sequence length bounds for resolving a deep phylogenetic divergence
Journal of Theoretical Biology | 2018-10-23 | Paper |
Distribution of phylogenetic diversity under random extinction
Journal of Theoretical Biology | 2018-10-08 | Paper |
Reconstructing pedigrees: a stochastic perspective
Journal of Theoretical Biology | 2018-10-08 | Paper |
The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees
Journal of Theoretical Biology | 2018-10-04 | Paper |
The impact and interplay of long and short branches on phylogenetic information content
Journal of Theoretical Biology | 2018-10-04 | Paper |
Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
Journal of Theoretical Biology | 2018-09-21 | Paper |
Constructing big trees from short sequences
Automata, Languages and Programming | 2018-07-04 | Paper |
Combinatorial properties of triplet covers for binary trees
Advances in Applied Mathematics | 2018-06-08 | Paper |
Combinatorial properties of triplet covers for binary trees
Advances in Applied Mathematics | 2018-06-08 | Paper |
A note on random catalytic branching processes
Journal of Theoretical Biology | 2018-05-24 | Paper |
Evolutionary isolation and phylogenetic diversity loss under random extinction events
Journal of Theoretical Biology | 2018-05-24 | Paper |
Autocatalytic networks in cognition and the origin of culture
Journal of Theoretical Biology | 2018-04-24 | Paper |
Minimum triplet covers of binary phylogenetic \(X\)-trees
Journal of Mathematical Biology | 2017-11-08 | Paper |
Locating a tree in a phylogenetic network
Information Processing Letters | 2017-11-03 | Paper |
New characterisations of tree-based networks and proximity measures
Advances in Applied Mathematics | 2017-10-20 | Paper |
New characterisations of tree-based networks and proximity measures
Advances in Applied Mathematics | 2017-10-20 | Paper |
The optimal rate for resolving a near-polytomy in a phylogeny
Journal of Theoretical Biology | 2017-09-08 | Paper |
Autocatalytic sets in polymer networks with variable catalysis distributions
Journal of Mathematical Chemistry | 2017-08-22 | Paper |
Phylogenetic mixtures and linear invariants for equal input models
Journal of Mathematical Biology | 2017-05-11 | Paper |
Neighborhoods of phylogenetic trees: exact and asymptotic counts
SIAM Journal on Discrete Mathematics | 2016-12-13 | Paper |
Folding and unfolding phylogenetic trees and networks
Journal of Mathematical Biology | 2016-11-04 | Paper |
Phylogeny. Discrete and random processes in evolution
CBMS-NSF Regional Conference Series in Applied Mathematics | 2016-10-26 | Paper |
Majority rule has transition ratio 4 on Yule trees under a 2-state symmetric model
Journal of Theoretical Biology | 2016-08-19 | Paper |
Do tree split probabilities determine the branch lengths?
Journal of Theoretical Biology | 2016-07-27 | Paper |
Clades, clans, and reciprocal monophyly under neutral evolutionary models
Theoretical Population Biology | 2016-06-22 | Paper |
A `stochastic safety radius' for distance-based tree reconstruction
Algorithmica | 2016-05-31 | Paper |
Predicting template-based catalysis rates in a simple catalytic reaction model
Journal of Theoretical Biology | 2016-05-19 | Paper |
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
Journal of Theoretical Biology | 2016-05-19 | Paper |
A navigation system for tree space
Journal of Graph Algorithms and Applications | 2016-04-19 | Paper |
Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
Theoretical Population Biology | 2016-03-02 | Paper |
Bounds on the expected size of the maximum agreement subtree
SIAM Journal on Discrete Mathematics | 2015-10-30 | Paper |
Self-sustaining autocatalytic networks within open-ended reaction systems
Journal of Mathematical Chemistry | 2015-09-28 | Paper |
Screening-off and causal incompleteness: a no-go theorem
The British Journal for the Philosophy of Science | 2015-09-02 | Paper |
How probable is common ancestry according to different evolutionary processes?
Journal of Theoretical Biology | 2015-06-23 | Paper |
The existence and abundance of ghost ancestors in biparental populations
Theoretical Population Biology | 2015-06-19 | Paper |
Reflections on the extinction-explosion dichotomy
Theoretical Population Biology | 2015-06-19 | Paper |
Tree-like reticulation networks -- when do tree-like distances also support reticulate evolution?
Mathematical Biosciences | 2015-05-06 | Paper |
Tracing evolutionary links between species
The American Mathematical Monthly | 2015-04-21 | Paper |
Tracing evolutionary links between species
The American Mathematical Monthly | 2015-04-21 | Paper |
The structure of symmetric n-player games when influence and independence collide
Advances in Applied Mathematics | 2014-11-20 | Paper |
Tree reconstruction from triplet cover distances
The Electronic Journal of Combinatorics | 2014-09-04 | Paper |
Tree reconstruction from triplet cover distances
The Electronic Journal of Combinatorics | 2014-09-04 | Paper |
A matroid associated with a phylogenetic tree
(available as arXiv preprint) | 2014-07-01 | Paper |
| A matroid associated with a phylogenetic tree | 2014-07-01 | Paper |
Autocatalytic sets and biological specificity
Bulletin of Mathematical Biology | 2014-03-20 | Paper |
Does random tree puzzle produce Yule-Harding trees in the many-taxon limit?
Mathematical Biosciences | 2014-02-05 | Paper |
The `Butterfly effect' in Cayley graphs with applications to genomics.
Journal of Mathematical Biology | 2012-12-13 | Paper |
`Lassoing' a phylogenetic tree. I: Basic properties, shellings, and covers
Journal of Mathematical Biology | 2012-10-22 | Paper |
Trait-dependent extinction leads to greater expected biodiversity loss
SIAM Journal on Discrete Mathematics | 2012-09-12 | Paper |
Trait-dependent extinction leads to greater expected biodiversity loss
SIAM Journal on Discrete Mathematics | 2012-09-12 | Paper |
`Bureaucratic' set systems, and their role in phylogenetics
Applied Mathematics Letters | 2012-08-30 | Paper |
| On Patchworks and Hierarchies | 2012-02-11 | Paper |
Inverting random functions. III: Discrete MLE revisited
Annals of Combinatorics | 2012-01-24 | Paper |
Quantifying the extent of lateral gene transfer required to avert a `genome of Eden'
Bulletin of Mathematical Biology | 2010-12-15 | Paper |
Inferring ancestral sequences in taxon-rich phylogenies
Mathematical Biosciences | 2010-10-15 | Paper |
Inferring ancestral sequences in taxon-rich phylogenies
Mathematical Biosciences | 2010-10-15 | Paper |
The expected length of pendant and interior edges of a Yule tree
Applied Mathematics Letters | 2010-09-20 | Paper |
Logarithmic bounds on the posterior divergence time of two sequences
Applied Mathematics Letters | 2010-08-18 | Paper |
A Hall-type theorem for triplet set systems based on medians in trees
Applied Mathematics Letters | 2010-02-12 | Paper |
Markovian log-supermodularity, and its applications in phylogenetics
Applied Mathematics Letters | 2010-01-29 | Paper |
Characterizing phylogenetically decisive taxon coverage
Applied Mathematics Letters | 2010-01-08 | Paper |
An improved bound on the maximum agreement subtree problem
Applied Mathematics Letters | 2009-11-13 | Paper |
Stochastic properties of generalised Yule models, with biodiversity applications
Journal of Mathematical Biology | 2009-02-03 | Paper |
Mixed-up trees: the structure of phylogenetic mixtures
Bulletin of Mathematical Biology | 2008-09-08 | Paper |
Counting ancestral reconstructions in a fixed phylogeny
Annals of Combinatorics | 2008-08-18 | Paper |
