| Publication | Date of Publication | Type |
|---|
Transformations to simplify phylogenetic networks
Bulletin of Mathematical Biology | 2025-01-13 | Paper |
0-1 laws for pattern occurrences in phylogenetic trees and networks
Bulletin of Mathematical Biology | 2024-07-15 | Paper |
Autocatalytic sets and chemical organizations: modeling self-sustaining reaction networks at the origin of life
New Journal of Physics | 2024-04-23 | Paper |
Phylogenetic network classes through the lens of expanding covers
Journal of Mathematical Biology | 2024-04-10 | Paper |
Combinatorial and stochastic properties of ranked tree‐child networks
Random Structures \& Algorithms | 2023-10-12 | Paper |
The expected loss of feature diversity (versus phylogenetic diversity) following rapid extinction at the present
Journal of Mathematical Biology | 2023-09-15 | Paper |
Spaces of phylogenetic diversity indices: combinatorial and geometric properties
Bulletin of Mathematical Biology | 2023-08-08 | Paper |
Labellable phylogenetic networks
Bulletin of Mathematical Biology | 2023-05-17 | Paper |
Counting and optimising maximum phylogenetic diversity sets
Journal of Mathematical Biology | 2022-08-04 | Paper |
Defining phylogenetic networks using ancestral profiles
Mathematical Biosciences | 2021-11-08 | Paper |
Combinatorics of Polymer-Based Models of Early Metabolism
SIAM Journal on Discrete Mathematics | 2021-10-18 | Paper |
Conditions under which distributions of edge length ratios on phylogenetic trees can be used to order evolutionary events
Journal of Theoretical Biology | 2021-07-16 | Paper |
Modelling aspects of consciousness: a topological perspective
Journal of Theoretical Biology | 2021-06-14 | Paper |
Optimizing phylogenetic diversity under constraints
Journal of Theoretical Biology | 2020-11-05 | Paper |
Reconstructing pedigrees: a combinatorial perspective
Journal of Theoretical Biology | 2020-09-17 | Paper |
Complexity results for autocatalytic network models
Mathematical Biosciences | 2020-09-01 | Paper |
Random biochemical networks: the probability of self-sustaining autocatalysis
Journal of Theoretical Biology | 2020-07-16 | Paper |
Lambert and Stadler (2013): a unifying framework for modelling evolutionary trees
Theoretical Population Biology | 2020-06-04 | Paper |
Detecting autocatalytic, self-sustaining sets in chemical reaction systems
Journal of Theoretical Biology | 2020-06-03 | Paper |
Dynamics of a birth-death process based on combinatorial innovation
Journal of Theoretical Biology | 2020-04-03 | Paper |
Combinatorial properties of phylogenetic diversity indices
Journal of Mathematical Biology | 2020-02-21 | Paper |
A class of phylogenetic networks reconstructable from ancestral profiles
Mathematical Biosciences | 2019-10-10 | Paper |
Consistency of Bayesian inference of resolved phylogenetic trees
Journal of Theoretical Biology | 2019-05-14 | Paper |
Predicting the loss of phylogenetic diversity under non-stationary diversification models
Journal of Theoretical Biology | 2019-05-14 | Paper |
Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
Journal of Mathematical Biology | 2019-05-03 | Paper |
Species notions that combine phylogenetic trees and phenotypic partitions
Journal of Mathematical Biology | 2019-03-29 | Paper |
Phylogenetic flexibility via Hall-type inequalities and submodularity
Bulletin of Mathematical Biology | 2019-03-26 | Paper |
Tree-based networks: characterisations, metrics, and support trees
Journal of Mathematical Biology | 2019-03-15 | Paper |
On the information content of discrete phylogenetic characters
Journal of Mathematical Biology | 2019-03-01 | Paper |
Comparing strategies to preserve evolutionary diversity
Journal of Theoretical Biology | 2019-02-18 | Paper |
Modelling the unpredictability of future biodiversity in ecological networks
Journal of Theoretical Biology | 2019-02-12 | Paper |
Identifying a species tree subject to random lateral gene transfer
Journal of Theoretical Biology | 2019-02-04 | Paper |
Clades, clans, and reciprocal monophyly under neutral evolutionary models
Theoretical Population Biology | 2018-12-05 | Paper |
Similarities as evidence for common ancestry: a likelihood epistemology
The British Journal for the Philosophy of Science | 2018-11-19 | Paper |
Phylogenetic information complexity: is testing a tree easier than finding it?
Journal of Theoretical Biology | 2018-11-08 | Paper |
A basic limitation on inferring phylogenies by pairwise sequence comparisons
Journal of Theoretical Biology | 2018-11-08 | Paper |
Sequence length bounds for resolving a deep phylogenetic divergence
Journal of Theoretical Biology | 2018-10-23 | Paper |
Distribution of phylogenetic diversity under random extinction
Journal of Theoretical Biology | 2018-10-08 | Paper |
Reconstructing pedigrees: a stochastic perspective
Journal of Theoretical Biology | 2018-10-08 | Paper |
The impact and interplay of long and short branches on phylogenetic information content
Journal of Theoretical Biology | 2018-10-04 | Paper |
The standard lateral gene transfer model is statistically consistent for pectinate four-taxon trees
Journal of Theoretical Biology | 2018-10-04 | Paper |
Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
Journal of Theoretical Biology | 2018-09-21 | Paper |
Constructing big trees from short sequences
Automata, Languages and Programming | 2018-07-04 | Paper |
Combinatorial properties of triplet covers for binary trees
Advances in Applied Mathematics | 2018-06-08 | Paper |
A note on random catalytic branching processes
Journal of Theoretical Biology | 2018-05-24 | Paper |
Evolutionary isolation and phylogenetic diversity loss under random extinction events
Journal of Theoretical Biology | 2018-05-24 | Paper |
Autocatalytic networks in cognition and the origin of culture
Journal of Theoretical Biology | 2018-04-24 | Paper |
Minimum triplet covers of binary phylogenetic \(X\)-trees
Journal of Mathematical Biology | 2017-11-08 | Paper |
Locating a tree in a phylogenetic network
Information Processing Letters | 2017-11-03 | Paper |
New characterisations of tree-based networks and proximity measures
Advances in Applied Mathematics | 2017-10-20 | Paper |
The optimal rate for resolving a near-polytomy in a phylogeny
Journal of Theoretical Biology | 2017-09-08 | Paper |
Autocatalytic sets in polymer networks with variable catalysis distributions
Journal of Mathematical Chemistry | 2017-08-22 | Paper |
Phylogenetic mixtures and linear invariants for equal input models
Journal of Mathematical Biology | 2017-05-11 | Paper |
Neighborhoods of phylogenetic trees: exact and asymptotic counts
SIAM Journal on Discrete Mathematics | 2016-12-13 | Paper |
Folding and unfolding phylogenetic trees and networks
Journal of Mathematical Biology | 2016-11-04 | Paper |
Phylogeny. Discrete and random processes in evolution
CBMS-NSF Regional Conference Series in Applied Mathematics | 2016-10-26 | Paper |
Majority rule has transition ratio 4 on Yule trees under a 2-state symmetric model
Journal of Theoretical Biology | 2016-08-19 | Paper |
Do tree split probabilities determine the branch lengths?
Journal of Theoretical Biology | 2016-07-27 | Paper |
Clades, clans, and reciprocal monophyly under neutral evolutionary models
Theoretical Population Biology | 2016-06-22 | Paper |
A `stochastic safety radius' for distance-based tree reconstruction
Algorithmica | 2016-05-31 | Paper |
Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
Journal of Theoretical Biology | 2016-05-19 | Paper |
Predicting template-based catalysis rates in a simple catalytic reaction model
Journal of Theoretical Biology | 2016-05-19 | Paper |
A navigation system for tree space
Journal of Graph Algorithms and Applications | 2016-04-19 | Paper |
Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent
Theoretical Population Biology | 2016-03-02 | Paper |
Bounds on the expected size of the maximum agreement subtree
SIAM Journal on Discrete Mathematics | 2015-10-30 | Paper |
Self-sustaining autocatalytic networks within open-ended reaction systems
Journal of Mathematical Chemistry | 2015-09-28 | Paper |
Screening-Off and Causal Incompleteness: A No-Go Theorem
The British Journal for the Philosophy of Science | 2015-09-02 | Paper |
How probable is common ancestry according to different evolutionary processes?
Journal of Theoretical Biology | 2015-06-23 | Paper |
Reflections on the extinction-explosion dichotomy
Theoretical Population Biology | 2015-06-19 | Paper |
The existence and abundance of ghost ancestors in biparental populations
Theoretical Population Biology | 2015-06-19 | Paper |
Tree-like reticulation networks -- when do tree-like distances also support reticulate evolution?
Mathematical Biosciences | 2015-05-06 | Paper |
Tracing evolutionary links between species
The American Mathematical Monthly | 2015-04-21 | Paper |
The structure of symmetric \(n\)-player games when influence and independence collide
Advances in Applied Mathematics | 2014-11-20 | Paper |
Tree reconstruction from triplet cover distances
The Electronic Journal of Combinatorics | 2014-09-04 | Paper |
A matroid associated with a phylogenetic tree
| 2014-07-01 | Paper |
Autocatalytic sets and biological specificity
Bulletin of Mathematical Biology | 2014-03-20 | Paper |
Does random tree puzzle produce Yule-Harding trees in the many-taxon limit?
Mathematical Biosciences | 2014-02-05 | Paper |
The `Butterfly effect' in Cayley graphs with applications to genomics.
Journal of Mathematical Biology | 2012-12-13 | Paper |
`Lassoing' a phylogenetic tree. I: Basic properties, shellings, and covers
Journal of Mathematical Biology | 2012-10-22 | Paper |
Trait-dependent extinction leads to greater expected biodiversity loss
SIAM Journal on Discrete Mathematics | 2012-09-12 | Paper |
`Bureaucratic' set systems, and their role in phylogenetics
Applied Mathematics Letters | 2012-08-30 | Paper |
On Patchworks and Hierarchies
| 2012-02-11 | Paper |
Inverting random functions. III: Discrete MLE revisited
Annals of Combinatorics | 2012-01-24 | Paper |
Quantifying the extent of lateral gene transfer required to avert a `genome of Eden'
Bulletin of Mathematical Biology | 2010-12-15 | Paper |
Inferring ancestral sequences in taxon-rich phylogenies
Mathematical Biosciences | 2010-10-15 | Paper |
The expected length of pendant and interior edges of a Yule tree
Applied Mathematics Letters | 2010-09-20 | Paper |
Logarithmic bounds on the posterior divergence time of two sequences
Applied Mathematics Letters | 2010-08-18 | Paper |
A Hall-type theorem for triplet set systems based on medians in trees
Applied Mathematics Letters | 2010-02-12 | Paper |
Markovian log-supermodularity, and its applications in phylogenetics
Applied Mathematics Letters | 2010-01-29 | Paper |
Characterizing phylogenetically decisive taxon coverage
Applied Mathematics Letters | 2010-01-08 | Paper |
An improved bound on the maximum agreement subtree problem
Applied Mathematics Letters | 2009-11-13 | Paper |
Stochastic properties of generalised Yule models, with biodiversity applications
Journal of Mathematical Biology | 2009-02-03 | Paper |
Mixed-up trees: the structure of phylogenetic mixtures
Bulletin of Mathematical Biology | 2008-09-08 | Paper |
Counting ancestral reconstructions in a fixed phylogeny
Annals of Combinatorics | 2008-08-18 | Paper |
A regular decomposition of the edge-product space of phylogenetic trees
Advances in Applied Mathematics | 2008-06-26 | Paper |
Shrinkage Effect in Ancestral Maximum Likelihood
| 2008-02-07 | Paper |
Teasing Apart Two Trees
Combinatorics, Probability and Computing | 2007-11-22 | Paper |
Phylogenetic diversity over an abelian group
Annals of Combinatorics | 2007-10-11 | Paper |
Closure operations in phylogenetics
Mathematical Biosciences | 2007-10-09 | Paper |
Identifying \(X\)-trees with few characters
The Electronic Journal of Combinatorics | 2007-03-12 | Paper |
On the variational distance of two trees
The Annals of Applied Probability | 2007-02-05 | Paper |
Estimating the relative order of speciation or coalescence events on a given phylogeny
| 2006-10-27 | Paper |
Accumulation phylogenies
Annals of Combinatorics | 2006-06-28 | Paper |
Mapping edge sets to splits in trees: the path index and parsimony
Annals of Combinatorics | 2006-06-28 | Paper |
How much can evolved characters tell us about the tree that generated them?
| 2006-06-14 | Paper |
Research in Computational Molecular Biology
Lecture Notes in Computer Science | 2005-11-23 | Paper |
Four Characters Suffice to Convexly Define a Phylogenetic Tree
SIAM Journal on Discrete Mathematics | 2005-09-16 | Paper |
Recovering a phylogenetic tree using pairwise closure operations
Applied Mathematics Letters | 2005-08-01 | Paper |
Two further links between MP and ML under the Poisson model.
Applied Mathematics Letters | 2005-03-07 | Paper |
A framework for representing reticulate evolution
Annals of Combinatorics | 2005-02-25 | Paper |
Peeling phylogenetic `oranges'
Advances in Applied Mathematics | 2005-01-26 | Paper |
Cyclic permutations and evolutionary trees
Advances in Applied Mathematics | 2004-10-12 | Paper |
U(1) ×U(1) ×U(1) symmetry of the Kimura 3ST model and phylogenetic branching processes
Journal of Physics A: Mathematical and General | 2004-06-09 | Paper |
A phase transition for a random cluster model on phylogenetic trees.
Mathematical Biosciences | 2004-05-27 | Paper |
scientific article; zbMATH DE number 1974592 (Why is no real title available?)
| 2003-09-03 | Paper |
scientific article; zbMATH DE number 1865935 (Why is no real title available?)
| 2003-02-10 | Paper |
Inverting Random Functions II: Explicit Bounds for Discrete Maximum Likelihood Estimation, with Applications
SIAM Journal on Discrete Mathematics | 2003-01-05 | Paper |
Tree reconstruction from multi-state characters
Advances in Applied Mathematics | 2002-09-12 | Paper |
scientific article; zbMATH DE number 1743822 (Why is no real title available?)
| 2002-06-24 | Paper |
Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree
Applied Mathematics Letters | 2002-06-13 | Paper |
scientific article; zbMATH DE number 1746444 (Why is no real title available?)
| 2002-05-28 | Paper |
A characterization for a set of partial partitions to define an \(X\)-tree
Discrete Mathematics | 2002-05-28 | Paper |
Approximating likelihoods under low but variable rates across sites
Applied Mathematics Letters | 2002-02-05 | Paper |
Properties of phylogenetic trees generated by Yule-type speciation models
Mathematical Biosciences | 2002-01-22 | Paper |
Subtree transfer operations and their induced metrics on evolutionary trees
Annals of Combinatorics | 2002-01-21 | Paper |
The combinatorics of evolutionary trees---a survey
Séminaire Lotharingien de Combinatoire | 2001-11-05 | Paper |
Inverting random functions
Annals of Combinatorics | 2001-08-16 | Paper |
A supertree method for rooted trees
Discrete Applied Mathematics | 2001-05-21 | Paper |
Constructing optimal trees from quartets
Journal of Algorithms | 2001-04-17 | Paper |
Sufficient conditions for two tree reconstruction techniques to succeed on sufficiently long sequences
SIAM Journal on Discrete Mathematics | 2001-03-19 | Paper |
Algorithmic Aspects of Tree Amalgamation
Journal of Algorithms | 2000-12-19 | Paper |
The emergence of a self-catalysing structure in abstract origin-of-life models
Applied Mathematics Letters | 2000-12-04 | Paper |
A few logs suffice to build (almost) all trees (I)
| 2000-09-24 | Paper |
Tree representations of non-symmetric group-valued proximities
Advances in Applied Mathematics | 2000-09-05 | Paper |
Kaikoura tree theorems: Computing the maximum agreement subtree
Information Processing Letters | 2000-08-14 | Paper |
Distributions of cherries for two models of trees
Mathematical Biosciences | 2000-07-09 | Paper |
The difficulty of constructing a leaf-labelled tree including or avoiding given subtrees
Discrete Applied Mathematics | 2000-04-10 | Paper |
Patching up \(X\)-trees
Annals of Combinatorics | 2000-04-04 | Paper |
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
Bulletin of Mathematical Biology | 2000-03-29 | Paper |
A few logs suffice to build (almost) all trees. II
Theoretical Computer Science | 2000-01-12 | Paper |
scientific article; zbMATH DE number 1113973 (Why is no real title available?)
| 1999-09-13 | Paper |
scientific article; zbMATH DE number 1305402 (Why is no real title available?)
| 1999-06-17 | Paper |
Retractions of finite distance functions onto tree metrics
Discrete Applied Mathematics | 1999-06-06 | Paper |
Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
Discrete Applied Mathematics | 1999-03-22 | Paper |
Modeling the covarion hypothesis of nucleotide substitution
Mathematical Biosciences | 1998-04-22 | Paper |
The Length of a Leaf Coloration on a Random Binary Tree
SIAM Journal on Discrete Mathematics | 1998-02-09 | Paper |
A central limit theorem for the parsimony length of trees
Advances in Applied Probability | 1997-10-01 | Paper |
Trees, taxonomy, and strongly compatible multi-state characters
Advances in Applied Mathematics | 1997-08-25 | Paper |
scientific article; zbMATH DE number 1026279 (Why is no real title available?)
| 1997-06-24 | Paper |
Extension operations on sets of leaf-labelled trees
Advances in Applied Mathematics | 1997-06-12 | Paper |
Bounds on absorption times of directionally biased random sequences
| 1997-04-09 | Paper |
Finding a maximum compatible tree is NP-hard for sequences and trees
Applied Mathematics Letters | 1996-08-11 | Paper |
Symmetric Matrices Representable by Weighted Trees over a Cancellative Abelian Monoid
SIAM Journal on Discrete Mathematics | 1996-07-17 | Paper |
Pure adaptive search for finite global optimization
Mathematical Programming. Series A. Series B | 1996-02-12 | Paper |
Five surprising properties of parsimoniously colored trees
Bulletin of Mathematical Biology | 1995-04-04 | Paper |
scientific article; zbMATH DE number 637307 (Why is no real title available?)
| 1994-10-06 | Paper |
Recovering a tree from the leaf colourations it generates under a Markov model
Applied Mathematics Letters | 1994-08-28 | Paper |
A discrete Fourier analysis for evolutionary trees.
Proceedings of the National Academy of Sciences | 1994-07-11 | Paper |
On a problem of Andersson and Perlman
Statistics \& Probability Letters | 1994-05-24 | Paper |
A limiting theorem for parsimoniously bicoloured trees
Applied Mathematics Letters | 1994-03-10 | Paper |
Decompositions of leaf-colored binary trees
Advances in Applied Mathematics | 1993-11-28 | Paper |
Fourier calculus on evolutionary trees
Advances in Applied Mathematics | 1993-09-05 | Paper |
A Fourier inversion formula for evolutionary trees
Applied Mathematics Letters | 1993-08-11 | Paper |
Distributions on bicoloured binary trees arising from the principle of parsimony
Discrete Applied Mathematics | 1993-05-16 | Paper |
Spectral analysis and a closest tree method for genetic sequences
Applied Mathematics Letters | 1993-04-01 | Paper |
Significance of the length of the shortest tree
Journal of Classification | 1993-02-04 | Paper |
The complexity of reconstructing trees from qualitative characters and subtrees
Journal of Classification | 1993-02-04 | Paper |
Convex tree realizations of partitions
Applied Mathematics Letters | 1993-01-06 | Paper |
Distributions on bicoloured evolutionary trees
Bulletin of the Australian Mathematical Society | 1990-01-01 | Paper |
Distribution of the Symmetric Difference Metric on Phylogenetic Trees
SIAM Journal on Discrete Mathematics | 1988-01-01 | Paper |
0-1 laws for pattern occurrences in phylogenetic trees and networks
| N/A | Paper |
