The expected length of pendant and interior edges of a Yule tree

DOI10.1016/J.AML.2010.06.021zbMATH Open1195.92048arXiv0910.5240OpenAlexW2594042085MaRDI QIDQ993754FDOQ993754

Authors: Mike Steel, Arne Ø. Mooers Edit this on Wikidata

Publication date: 20 September 2010

Published in: Applied Mathematics Letters (Search for Journal in Brave)

Abstract: The Yule (pure-birth) model is the simplest null model of speciation; each lineage gives rise to a new lineage independently with the same rate $lambda$. We investigate the expected length of an edge chosen at random from the resulting evolutionary tree. In particular, we compare the expected length of a randomly selected edge with the expected length of a randomly selected pendant edge. We provide some exact formulae, and show how our results depend slightly on whether the depth of the tree or the number of leaves is conditioned on, and whether $lambda$ is known or is estimated using maximum likelihood.

Full work available at URL: https://arxiv.org/abs/0910.5240

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zbMATH Keywords

treedifferential equationYule modelpure-birth process

Mathematics Subject Classification ID

Applications of graph theory (05C90) Problems related to evolution (92D15) Trees (05C05)

Cites Work

• The conditioned reconstructed process
• Stochastic properties of generalised Yule models, with biodiversity applications

Cited In (10)

• Evolutionary isolation and phylogenetic diversity loss under random extinction events
• Quantifying the effects of anagenetic and cladogenetic evolution
• Probability distributions of ancestries and genealogical distances on stochastically generated rooted binary trees
• Properties of phylogenetic trees generated by Yule-type speciation models
• Distribution of external branch lengths in Yule histories
• Probability distribution of tree age for the simple birth-death process, with applications to distributions of number of ancestral lineages and divergence times for pairs of taxa in a Yule tree
• Distribution of branch lengths and phylogenetic diversity under homogeneous speciation models
• On the distribution of interspecies correlation for Markov models of character evolution on Yule trees
• The mean and variance of the numbers of \(r\)-pronged nodes and \(r\)-caterpillars in Yule-generated genealogical trees
• Identifying a species tree subject to random lateral gene transfer

Uses Software

• Phylomatic

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