Reconstructing pedigrees: a combinatorial perspective

DOI10.1016/J.JTBI.2005.09.026MaRDI QIDQ2202133zbMATH OpenOpenAlexWikidataFDO

Authors Mike Steel, Jotun Hein

Publication date 17 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.09.026

zbMATH Keywords

enumerationisomorphismpedigreereconstruction

Mathematics Subject Classification ID

Directed graphs (digraphs), tournaments (05C20) Genetics and epigenetics (92D10)

Recommendations

• Combinatorics of Pedigrees I: Counterexamples to a Reconstruction Question
• Reconstructing pedigrees: a stochastic perspective
• Reconstructing pedigrees: Some identifiability questions for a recombination-mutation model
• Efficient maximum likelihood pedigree reconstruction
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees

Cites work

• A few logs suffice to build (almost) all trees (I)
• A Remark on Stirling's Formula
• Enumeration and simulation of marriage node graphs on zero-loop pedigrees
• How much can evolved characters tell us about the tree that generated them?
• scientific article; zbMATH DE number 3758132 (Why is no real title available?)
• scientific article; zbMATH DE number 1461249 (Why is no real title available?)
• scientific article; zbMATH DE number 1865935 (Why is no real title available?)
• Inverting random functions
• Phylogenetic supertrees. Combining information to reveal the tree of life
• Simulating realistic zero loop pedigrees using a bipartite Prufer code and graphical modelling
• Statistical inference from genetic data on pedigrees

Cited in

(12)

• Population structure and coalescence in pedigrees: comparisons to the structured coalescent and a framework for inference
• Reconstructing pedigrees: a stochastic perspective
• Reconstructing pedigrees: Some identifiability questions for a recombination-mutation model
• Reconstructing pedigrees using probabilistic analysis of ISSR amplification
• The largest strongly connected component in the cyclical pedigree model of Wakeley et al.
• Forest-based networks
• Computation of ancestry scores with mixed families and unrelated individuals
• Combinatorics of Pedigrees I: Counterexamples to a Reconstruction Question
• ReCombinatorics: Combinatorial Algorithms for Studying the History of Recombination in Populations
• Enumeration and simulation of marriage node graphs on zero-loop pedigrees
• FSTTCS 2005: Foundations of Software Technology and Theoretical Computer Science
• A simulated annealing algorithm for maximum likelihood pedigree reconstruction

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