Reconstructing pedigrees using probabilistic analysis of ISSR amplification

DOI10.1016/J.JTBI.2016.09.014MaRDI QIDQ2013507zbMATH OpenOpenAlexWikidataFDO

Authors Valéry Malécot, Richard Pymar, Chaker Sbai, Loïc Chaumont

Publication date 8 August 2017

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1508.00104

zbMATH Keywords

gene frequencyISSR amplificationlaw of reproductionpedigree

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Abstract: Data obtained from ISSR amplification may readily be extracted but only allows us to know, for each gene, if a specific allele is present or not. From this partial information we provide a probabilistic method to reconstruct the pedigree corresponding to some families of diploid cultivars. This method consists in determining for each individual what is the most likely couple of parent pair amongst all older individuals, according to some probability measure. The construction of this measure bears on the fact that the probability to observe the specific alleles in the child, given the status of the parents does not depend on the generation and is the same for each gene. This assumption is then justified from a convergence result of gene frequencies which is proved here. Our reconstruction method is applied to a family of 85 living accessions representing the common broom {it Cytisus scoparius}.

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Cites work

• A survey of random processes with reinforcement
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• Reconstructing pedigrees: a combinatorial perspective
• Reconstructing pedigrees: a stochastic perspective
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Cited in

(4)

• Probabilistic reconstruction of genealogies for polyploid plant species
• Genetic diversity of oil-tea camellia germplasms revealed by issr analysis
• Reconstruction of pedigrees in clonal plant populations
• Reconstruction of pedigrees in clonal plant populations

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