Reconstruction of pedigrees in clonal plant populations

DOI10.1016/J.TPB.2010.05.002MaRDI QIDQ5890790zbMATH OpenOpenAlexWikidataFDO

Authors Markus Riester, Peter F. Stadler, Konstantin Klemm

Publication date 22 June 2016

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2010.05.002

zbMATH Keywords

pedigreeMCMCSNPmicrosatelliteselfingclonalparentage

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Reconstruction of pedigrees in clonal plant populations
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• Efficient maximum likelihood pedigree reconstruction
• Reconstructing pedigrees using probabilistic analysis of ISSR amplification
• Probabilistic reconstruction of genealogies for polyploid plant species

Cites work

• scientific article; zbMATH DE number 41891 (Why is no real title available?)
• scientific article; zbMATH DE number 1390097 (Why is no real title available?)
• A Markov chain Monte Carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a Fisher-Wright model with partial selfing
• A graphical approach to relatedness inference
• A simulated annealing algorithm for maximum likelihood pedigree reconstruction
• Efficient maximum likelihood pedigree reconstruction
• On the Irreducibility of a Markov Chain Defined on a Space of Genotype Configurations by a Sampling Scheme
• Statistical inference from genetic data on pedigrees
• The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction

Cited in

(9)

• Reconstructing pedigrees using probabilistic analysis of ISSR amplification
• A commentary on some recent methods in sibling group reconstruction based on set coverings
• A bootstrap assessment of variability in pedigree reconstruction based on genetic markers
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations
• Reconstruction of pedigrees in clonal plant populations
• On the choice of prior density for the Bayesian analysis of pedigree structure
• A Markov chain Monte Carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a Fisher-Wright model with partial selfing
• Probabilistic reconstruction of genealogies for polyploid plant species

Describes a project that uses

Uses Software

• FRANz
• Cervus
• GENEPOP
• PARENTE
• FaMoz

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