Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
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Publication:4992756
DOI10.1007/978-1-4471-5298-9_6zbMath1462.92046OpenAlexW93958072MaRDI QIDQ4992756
Publication date: 10 June 2021
Published in: Models and Algorithms for Genome Evolution (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/978-1-4471-5298-9_6
incomplete lineage sortingedit distancehorizontal gene transfergeneral time reversibletrue alignment
Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Research exposition (monographs, survey articles) pertaining to biology (92-02)
Related Items (4)
A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering ⋮ An improved model for whole genome phylogenetic analysis by Fourier transform ⋮ Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling ⋮ Detecting Locus Acquisition Events in Gene Trees
Uses Software
- MrBayes
- RAxML
- PAUP*
- BIONJ
- Balibase
- HMMER
- 3DCoffee
- ProbCons
- ClustalW
- BEAST
- LAGAN
- MUSCLE
- Kalign
- NAST
- Statalign
- Bali-phy
- Mugsy
- Infernal
- SABmark
- PartTree
- RIATA-HGT
- PROMALS
- OXBench
- ProtTest 3
- iGTP
- BUCKy
- Mauve
- SATe
- Probalign
- pplacer
- FastTree
- SuperFine
- TNT
- DACTAL
- Rec-I-DCM3
- Quartets MaxCut
- NINJA
- SATCHMO-JS
- SPEM
- MSACompro
- FASTSP
- COBALT
- GapCoder
- SEPP
- MLTreeMap
- POY
- Gegenees
Cites Work
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- SATCHMO-JS
- SPEM
- MSACompro
- FASTSP
- COBALT
- GapCoder
- SEPP
- MLTreeMap
- POY
- Gegenees
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