RAxML

swMATH7716MaRDI QIDQ19733FDOQ19733

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Source code repository: https://github.com/stamatak/standard-RAxML

Cited In (33)

• Phylogenetic estimation with partial likelihood tensors
• Effects of discordance between species and gene trees on phylogenetic diversity conservation
• TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees
• Euro-Par 2004 Parallel Processing
• Parallel maximum likelihood estimator for multiple linear regression models
• Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
• Title not available (Why is that?)
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
• Batch Matrix Exponentiation
• Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids
• The rise of statistical phylogenetics
• Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks
• Site pattern probabilities under the multispecies coalescent and a relaxed molecular clock: theory and applications
• Is the protein model assignment problem under linked branch lengths NP-hard?
• Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO
• Reversible polymorphism-aware phylogenetic models and their application to tree inference
• Characterizing local optima for maximum parsimony
• On partial gene transfer and its impact on gene tree reconstruction
• Efficiently Inferring Pairwise Subtree Prune-and-Regraft Adjacencies between Phylogenetic Trees
• Error Detection and Correction of Gene Trees
• Computing nearest neighbour interchange distances between ranked phylogenetic trees
• Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
• Bayesian-weighted triplet and quartet methods for species tree inference
• Spectral Neighbor Joining for Reconstruction of Latent Tree Models
• Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?
• Quantum channel simulation of phylogenetic branching models
• Quantitative immunology for physicists
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Analysis of Phylogenetics and Evolution with R
• Phase transition in the sample complexity of likelihood-based phylogeny inference
• An extended model for phylogenetic maximum likelihood based on discrete morphological characters
• \textsc{FlipCut} supertrees: towards matrix representation accuracy in polynomial time
• A scalable parallelization of the gene duplication problem

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