swMATH8311CRANphangornMaRDI QIDQ20321FDOQ20321
Phylogenetic Reconstruction and Analysis
Emmanuel Paradis, Leonardo de Oliveira Martins, Klaus Schliep, Alastair Potts, Iris Bardel-kahr
Last update: 23 January 2023
Copyright license: GNU General Public License, version 3.0, GNU General Public License, version 2.0
Software version identifier: 2.11.1
Official website: http://cran.r-project.org/web/packages/phangorn/index.html
Source code repository: https://github.com/cran/phangorn
Cited In (67)
- Modeling rate of adaptive trait evolution using Cox-Ingersoll-Ross process: an approximate Bayesian computation approach
- ape
- Clustal
- BEAST
- LASER
- SeqinR
- phytools
- rwty
- Rankcluster
- dendextend
- Prokka
- TreeSim
- stringdist
- TOPD/FMTS
- taxize
- DensiTree
- Partitionfinder
- Tracer
- treespace
- RecordLinkage
- qPR
- Treevo
- OUOUCIR
- MSCquartets
- TERA
- genBaRcode
- scistreer
- TreeDist
- windex
- DCLEAR
- hisse
- paleotree
- rapidphylo
- Bayesian-weighted triplet and quartet methods for species tree inference
- Analysis of phylogenetics and evolution with R
- babette
- beastier
- nodeSub
- pirouette
- immunarch
- POMS
- dowser
- phyloregion
- liayson
- sketching
- Rphylip
- dispRity
- OUwie
- pcmabc
- microbial
- EnvNJ
- Uncertainty in Phylogenetic Tree Estimates
- MonoPhy
- markophylo
- BSS
- recluster
- apex
- haplotypes
- STraTUS
- ips
- datelife
- TML
- LDM
- Consistency and convergence rate of phylogenetic inference via regularization
- On the Maximum Agreement Subtree Conjecture for Balanced Trees
- Registering the evolutionary history in individual-based models of speciation
- DADA2
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