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On characteristics of ancestral character-state reconstructions under the accelerated transformation optimization ⋮ Phylogenetic estimation with partial likelihood tensors ⋮ The agreement metric for labeled binary trees ⋮ A tree \(\cdot\) a window \(\cdot\) a hill; generalization of nearest- neighbor interchange in phylogenetic optimization ⋮ A comparison of ancestral state reconstruction methods for quantitative characters ⋮ Concentration inequality for evolutionary trees ⋮ Characterizing local optima for maximum parsimony ⋮ Approximating geodesic tree distance ⋮ A tabu search algorithm for maximum parsimony phylogeny inference ⋮ Reconstructing ancestral character states under Wagner parsimony ⋮ A distance measure based on binary character data and its application to phylogeny reconstruction ⋮ A lower bound for the breakpoint phylogeny problem ⋮ On finding the Adams consensus tree ⋮ \textsc{FlipCut} supertrees: towards matrix representation accuracy in polynomial time ⋮ The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence ⋮ A more efficient algorithm for MPR problems in phylogeny ⋮ Majority-rule (+) consensus trees ⋮ The size of the character state space affects the occurrence and detection of homoplasy: modelling the probability of incompatibility for unordered phylogenetic characters ⋮ Phylogenetics of artificial manuscripts ⋮ Tumor classification using phylogenetic methods on expression data ⋮ Time-dependent-asymmetric-linear-parsimonious ancestral state reconstruction ⋮ An axiomatic study of majority-rule \((+)\) and associated consensus functions on hierarchies ⋮ DASACT: a decision aiding software for axiomatic consensus theory ⋮ Unnamed Item ⋮ Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations ⋮ Lattice-theoretic properties of MPR-posets in phylogeny ⋮ Computing and Combinatorics ⋮ Unnamed Item ⋮ On a matching distance between rooted phylogenetic trees ⋮ Identifiability and reconstructibility of species phylogenies under a modified coalescent ⋮ Inferring phylogenetic trees using answer set programming ⋮ Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations ⋮ EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing ⋮ Reconstruction of large phylogenetic trees: a parallel approach ⋮ The minimum evolution problem: Overview and classification ⋮ Clustering binary oligonucleotide fingerprint vectors for DNA clone classification analysis ⋮ Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts ⋮ Efficiently Inferring Pairwise Subtree Prune-and-Regraft Adjacencies between Phylogenetic Trees ⋮ Algorithms in Computational Molecular Biology ⋮ Applying the bootstrap in phylogeny reconstruction ⋮ Bayesian-weighted triplet and quartet methods for species tree inference ⋮ Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret ⋮ Tropical Sufficient Statistics for Persistent Homology ⋮ An improved bound on the maximum agreement subtree problem ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation ⋮ Error Detection and Correction of Gene Trees ⋮ Jungles: A new solution to the host/parasite phylogeny reconciliation problem ⋮ Phylogenetic analysis of nucleotide sequences: An algebraic approach ⋮ Effects of discordance between species and gene trees on phylogenetic diversity conservation ⋮ Constructing rooted supertrees using distances
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