swMATH7834MaRDI QIDQ19850FDOQ19850
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Official website: http://paup.csit.fsu.edu/
Cited In (only showing first 100 items - show all)
- A more efficient algorithm for MPR problems in phylogeny
- Constructing rooted supertrees using distances
- Phylogenetic estimation with partial likelihood tensors
- On characteristics of ancestral character-state reconstructions under the accelerated transformation optimization
- Effects of discordance between species and gene trees on phylogenetic diversity conservation
- Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations
- Hierarchical latent class models for cluster analysis
- Estimating phylogenetic trees from pairwise likelihoods and posterior probabilities of substitution counts
- Error detection and correction of gene trees
- Tropical sufficient statistics for persistent homology
- Concentration inequality for evolutionary trees
- A tabu search algorithm for maximum parsimony phylogeny inference
- Identifiability and reconstructibility of species phylogenies under a modified coalescent
- Approximating geodesic tree distance
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Lattice-theoretic properties of MPR-posets in phylogeny
- Reconstruction of large phylogenetic trees: a parallel approach
- A comparison of ancestral state reconstruction methods for quantitative characters
- Characterizing local optima for maximum parsimony
- On a matching distance between rooted phylogenetic trees
- An axiomatic study of majority-rule \((+)\) and associated consensus functions on hierarchies
- The universal ancestor was a thermophile or a hyperthermophile: tests and further evidence
- A lower bound for the breakpoint phylogeny problem
- Majority-rule (+) consensus trees
- Phylogenetic analysis of nucleotide sequences: An algebraic approach
- Clustering binary oligonucleotide fingerprint vectors for DNA clone classification analysis
- Jungles: A new solution to the host/parasite phylogeny reconciliation problem
- Reconstructing ancestral character states under Wagner parsimony
- A distance measure based on binary character data and its application to phylogeny reconstruction
- An improved bound on the maximum agreement subtree problem
- Applying the bootstrap in phylogeny reconstruction
- The minimum evolution problem: Overview and classification
- A faster construction of greedy consensus trees
- Inferring phylogenetic trees using answer set programming
- COBALT
- FASTSP
- GapCoder
- Gegenees
- MLTreeMap
- MSACompro
- POY
- SATCHMO-JS
- SPEM
- Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret
- Tumor classification using phylogenetic methods on expression data
- Bayesian-weighted triplet and quartet methods for species tree inference
- The agreement metric for labeled binary trees
- Algorithms in computational molecular biology. Techniques approaches and applications.
- Time-dependent-asymmetric-linear-parsimonious ancestral state reconstruction
- A tree \(\cdot\) a window \(\cdot\) a hill; generalization of nearest- neighbor interchange in phylogenetic optimization
- ASTRAL-Pro
- FastMulRFS
- Phylogenetics of artificial manuscripts
- On finding the Adams consensus tree
- The size of the character state space affects the occurrence and detection of homoplasy: modelling the probability of incompatibility for unordered phylogenetic characters
- Using the Ornstein-Uhlenbeck process to model the evolution of interacting populations
- \textsc{FlipCut} supertrees: towards matrix representation accuracy in polynomial time
- EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
- Computing and Combinatorics
- ape
- fastDNAml
- MrBayes
- PHYLIP
- RAxML
- BIONJ
- BEAST
- EPoS
- FlipCut
- Seq-Gen
- PhySIC
- Notung
- MEGA
- Gaphyl
- PAML
- PhyML
- 3DCoffee
- ClustalW
- BEAGLE
- DPRml
- pIQPNNI
- SplitsTree
- DASACT
- NAST
- Clustal X
- Bali-phy
- Statalign
- PartTree
- GRAPPA
- r8s
- RIATA-HGT
- NINJA
- SIESTA
- TNT
- TreeOfTrees
- ASTRAL-II
- Dendroscope
- PROMALS
- iGTP
- OXBench
- BUCKy
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