Identifiability and reconstructibility of species phylogenies under a modified coalescent

DOI10.1007/s11538-018-0456-9zbMath1410.92078arXiv1701.06871OpenAlexW2581424563WikidataQ89172392 ScholiaQ89172392MaRDI QIDQ1736939

Colby Long, Laura S. Kubatko

Publication date: 26 March 2019

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1701.06871

zbMATH Keywords

molecular clockmultispecies coalescentSVDQuartets

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10)

Related Items (6)

A stochastic Farris transform for genetic data under the multispecies coalescent with applications to data requirements ⋮ Classes of explicit phylogenetic networks and their biological and mathematical significance ⋮ Phylogenomic Models from Tree Symmetries ⋮ Split probabilities and species tree inference under the multispecies coalescent model ⋮ Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes ⋮ Species Tree Inference from Genomic Sequences Using the Log-Det Distance

Uses Software

• fastDNAml
• PAUP*
• ASTRAL-II

Cites Work

• Line-of-descent and genealogical processes, and their applications in population genetics models
• The coalescent
• Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
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