TRACTION: fast non-parametric improvement of estimated gene trees

DOI10.4230/LIPICS.WABI.2019.4MaRDI QIDQ5091730zbMATH OpenOpenAlexFDO

Authors Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, Tandy J. Warnow

Publication date 27 July 2022

Full work available at URL https://drops.dagstuhl.de/opus/volltexte/2019/11034/pdf/LIPIcs-WABI-2019-4.pdf/

zbMATH Keywords

gene tree correctionhorizontal gene transferincomplete lineage sorting

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

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• scientific article; zbMATH DE number 7205091

Cites work

• A mathematical foundation for the analysis of cladistic character compatibility
• An idealized concept of the true cladistic character
• Comparison of phylogenetic trees
• Reconciliation with nonbinary gene trees revisited

Cited in

(2)

• QT-GILD: Quartet based gene tree imputation using deep learning improves phylogenomic analyses despite missing data
• TreeSolve: rapid error-correction of microbial gene trees

Describes a project that uses

Uses Software

• ASTRAL-II
• ecceTERA
• INDELible
• SimPhy
• OCTAL
• TreeFix
• ASTRID
• RAxML
• Notung
• DendroPy
• FastMe

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