A general framework for gene tree correction based on duplication-loss reconciliation

DOI10.4230/LIPICS.WABI.2017.8MaRDI QIDQ5111798zbMATH OpenFDO

Authors Nadia El-Mabrouk, Aïda Ouangraoua

Publication date 27 May 2020

zbMATH Keywords

phylogenysupertreegene tree correctionreconciliationpolytomy

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Gene tree correction for reconciliation and species tree inference: complexity and algorithms
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• Reconciliation with nonbinary gene trees revisited

Cites work

• Efficient non-binary gene tree resolution with weighted reconciliation cost
• The agreement problem for unrooted phylogenetic trees is FPT

Cited in

(7)

• Error detection and correction of gene trees
• Gene Tree Correction by Leaf Removal and Modification: Tractability and Approximability
• Orthology relation and gene tree correction: complexity results
• TRACTION: fast non-parametric improvement of estimated gene trees
• Correcting gene trees by leaf insertions: complexity and approximation
• TreeSolve: rapid error-correction of microbial gene trees
• Aligning and Labeling Genomes under the Duplication-Loss Model

Describes a project that uses

Uses Software

• ecceTERA
• TreeFix

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