Gene tree correction for reconciliation and species tree inference: complexity and algorithms
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Publication:2442816
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Cites work
- Complexity insights of the minimum duplication problem
- DLS-trees: a model of evolutionary scenarios
- From Gene Trees to Species Trees
- From Gene Trees to Species Trees through a Supertree Approach
- scientific article; zbMATH DE number 1113970 (Why is no real title available?)
- scientific article; zbMATH DE number 2234775 (Why is no real title available?)
- Inferring a Tree from Lowest Common Ancestors with an Application to the Optimization of Relational Expressions
- Maximum agreement and compatible supertrees
- Minimum leaf removal for reconciliation: complexity and algorithms
- New results on optimizing rooted triplets consistency
- Reconciling a gene tree to a species tree under the duplication cost model
- Some APX-completeness results for cubic graphs
Cited in
(26)- Isometric gene tree reconciliation revisited
- Gene tree species tree reconciliation with gene conversion
- Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters
- MUL-tree pruning for consistency and optimal reconciliation -- complexity and algorithms
- Complexity and algorithms for MUL-tree pruning
- On the effect of intralocus recombination on triplet-based species tree estimation
- Best match graphs and reconciliation of gene trees with species trees
- Reconciling event-labeled gene trees with MUL-trees and species networks
- Reconciling a gene tree to a species tree under the duplication cost model
- Minimum leaf removal for reconciliation: complexity and algorithms
- scientific article; zbMATH DE number 2011850 (Why is no real title available?)
- From Gene Trees to Species Trees
- Performance of matrix representation with parsimony for inferring species from gene trees
- Correcting gene tree by removal and modification: tractability and approximability
- Error detection and correction of gene trees
- TreeSolve: rapid error-correction of microbial gene trees
- Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss
- TRACTION: fast non-parametric improvement of estimated gene trees
- scientific article; zbMATH DE number 7205091 (Why is no real title available?)
- A general framework for gene tree correction based on duplication-loss reconciliation
- Constructing a consensus phylogeny from a leaf-removal distance (extended abstract)
- Gene Tree Correction by Leaf Removal and Modification: Tractability and Approximability
- Orthology relation and gene tree correction: complexity results
- Species Tree Inference from Genomic Sequences Using the Log-Det Distance
- Alignment distance of regular tree languages
- Correcting gene trees by leaf insertions: complexity and approximation
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