Cited in
(23)- Global alignment of molecular sequences via ancestral state reconstruction
- Parametric analysis of alignment and phylogenetic uncertainty
- A note on probabilistic models over strings: the linear algebra approach
- Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
- BayesCAT: Bayesian co-estimation of alignment and tree
- Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
- Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis
- iB4e
- MrBayes
- BEAST
- ppALIGN
- CLUSTAL
- HMMoC
- Rose
- MATRAS
- Statalign
- TM-align
- GUIDANCE2
- MAMMOTH
- BayesCAT
- Modeling substitution and indel processes for AFLP marker evolution and phylogenetic infer\-ence
- Protein domain hierarchy Gibbs sampling strategies
- Computing posterior probabilities for score-based alignments using ppALIGN
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