Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths

DOI10.1007/S00180-020-00969-1MaRDI QIDQ2228245zbMATH OpenOpenAlexFDO

Authors David A. Spade

Publication date 17 February 2021

Published in Computational Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00180-020-00969-1

zbMATH Keywords

Bayesian methodsMarkov chain Monte Carlomixing timestatistical phylogenetics

Mathematics Subject Classification ID

Discrete-time Markov processes on general state spaces (60J05) Computational methods for problems pertaining to statistics (62-08) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Problems related to evolution (92D15)

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• Geometric convergence and central limit theorems for multidimensional Hastings and Metropolis algorithms
• Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths
• Geometric ergodicity of Metropolis algorithms
• Honest exploration of intractable probability distributions via Markov chain Monte Carlo.
• scientific article; zbMATH DE number 3943611 (Why is no real title available?)
• scientific article; zbMATH DE number 3323598 (Why is no real title available?)
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• Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review
• Markov chain Monte Carlo methods for stochastic volatility models.
• Matching Sequences under Deletion/Insertion Constraints
• Minorization Conditions and Convergence Rates for Markov Chain Monte Carlo
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• On the geometric ergodicity of hybrid samplers
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• Simulation Run Length Control in the Presence of an Initial Transient

Cited in

(2)

• Estimating drift and minorization coefficients for Gibbs sampling algorithms
• Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths

Describes a project that uses

Uses Software

• BEAUti
• Bali-phy
• MrBayes
• BEAST

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