Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths

DOI10.1016/J.MBS.2015.07.002MaRDI QIDQ897717zbMATH OpenOpenAlexWikidataFDO

Authors David A. Spade, Radu Herbei, Laura Salter Kubatko

Publication date 7 December 2015

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2015.07.002

zbMATH Keywords

Markov chain Monte Carlomixing timegeometric ergodicityrandom-scan Metropolisstatistical phylogenetics

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
• Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny
• Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
• Bayesian phylogenetic inference using a combinatorial sequential Monte Carlo method
• Bayesian inference in molecular phylogenetics

Cites work

• scientific article; zbMATH DE number 3323598 (Why is no real title available?)
• Equation of state calculations by fast computing machines
• Geometric convergence and central limit theorems for multidimensional Hastings and Metropolis algorithms
• Geometric ergodicity and hybrid Markov chains
• Geometric ergodicity of Gibbs and block Gibbs samplers for a hierarchical random effects model
• Geometric ergodicity of Metropolis algorithms
• Honest exploration of intractable probability distributions via Markov chain Monte Carlo.
• Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
• Inference from iterative simulation using multiple sequences
• Minorization Conditions and Convergence Rates for Markov Chain Monte Carlo
• Monte Carlo sampling methods using Markov chains and their applications
• On the geometric ergodicity of hybrid samplers
• Quantitative bounds for Markov chain convergence: Wasserstein and total variation distances
• Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
• Sufficient burn-in for Gibbs samplers for a hierarchical random effects model.
• Two convergence properties of hybrid samplers

Cited in

(4)

• Estimating drift and minorization coefficients for Gibbs sampling algorithms
• Geometric ergodicity of a Metropolis-Hastings algorithm for Bayesian inference of phylogenetic branch lengths
• Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
• Bayesian phylogenetic inference using a combinatorial sequential Monte Carlo method

Describes a project that uses

Uses Software

• fastDNAml
• MrBayes
• BEAST
• BEAUti

This page was built for publication: Geometric ergodicity of a hybrid sampler for Bayesian inference of phylogenetic branch lengths

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q897717)