Protein domain hierarchy Gibbs sampling strategies

DOI10.1515/sagmb-2014-0008zbMath1296.92058OpenAlexW2006438342WikidataQ51070814 ScholiaQ51070814MaRDI QIDQ2922567

Andrew F. Neuwald

Publication date: 13 October 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2014-0008

zbMATH Keywords

Markov chain Monte CarloBayesian statisticscomputer algorithmprotein sequence analysis

Mathematics Subject Classification ID

General biostatistics (92B15)

Uses Software

• MrBayes
• BEAST
• Bali-phy
• PSI-BLAST
• BLAST
• Pfam

Cites Work

• Lookahead strategies for sequential Monte Carlo
• Surveying the manifold divergence of an entire protein class for statistical clues to underlying biochemical mechanisms
• Monte Carlo strategies in scientific computing.
• Covariance structure of the Gibbs sampler with applications to the comparisons of estimators and augmentation schemes
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem

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