PAML

swMATH10916MaRDI QIDQ22868FDOQ22868

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Cited In (30)

• Mathematical properties of some measures of evolutionary distance
• Phylogenetic estimation with partial likelihood tensors
• Comparing strategies to preserve evolutionary diversity
• Distributed and sequential algorithms for bioinformatics
• EdiPy: A resource to simulate the evolution of plant mitochondrial genes under the RNA editing
• Genetic codes as evolutionary filters: subtle differences in the structure of genetic codes result in significant differences in patterns of nucleotide substitution
• Fast computation of maximum likelihood trees by numerical approximation of amino acid replacement probabilities
• Ancestral sequence reconstruction for co-evolutionary models
• Bioinformatics and the Cell
• Visualizing Codon Usage Within and Across Genomes: Concepts and Tools
• Computational model for analyzing the evolutionary patterns of the neuraminidase gene of influenza A/H1N1
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• Modeling the effect of changing selective pressures on polymorphism and divergence
• Aminoacyl-tRNA synthetase classes and groups in prokaryotes
• Distribution of distances between topologies and its effect on detection of phylogenetic recombination
• Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
• The EM algorithm and the rise of computational biology
• Error Detection and Correction of Gene Trees
• Selection in favor of nucleotides G and C diversifies evolution rates and levels of polymorphism at mammalian synonymous sites
• Classification of molecular sequence data using Bayesian phylogenetic mixture models
• Bioinformatics. Volume I. Data, sequence analysis, and evolution
• Multilocus phylogenetic analysis with gene tree clustering
• The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
• Improved variance estimators for one- and two-parameter models of nucleotide substitution
• The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
• The limiting distribution of the effective population size of the ancestor of humans and chimpanzees
• Comparisons of d\(N\)/d\(S\) are time dependent for closely related bacterial genomes
• Power of the likelihood ratio test for models of DNA base substitution
• Evolutionary analysis and structural characterization of \textit{Aquilaria sinensis} sesquiterpene synthase in agarwood formation: a computational study
• Modeling a trait-dependent diversification process coupled with molecular evolution on a random species tree

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