Invertibility of the TKF model of sequence evolution

DOI10.1016/j.mbs.2005.12.025zbMath1086.92042arXivq-bio/0608017OpenAlexW1975946602WikidataQ51950642 ScholiaQ51950642MaRDI QIDQ2488650

Bhalchandra D. Thatte

Publication date: 11 May 2006

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/q-bio/0608017

zbMATH Keywords

Markov chainsalignmentidentifiabilityequationsphylogeneticsordinary differentialDNA sequence evolution modelsgeneral homology structures

Mathematics Subject Classification ID

Problems related to evolution (92D15) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Related Items (4)

Impossibility of consistent distance estimation from sequence lengths under the TKF91 model ⋮ Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis ⋮ Statistically consistent and computationally efficient inference of ancestral DNA sequences in the TKF91 model under dense taxon sampling ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation

Uses Software

• fastDNAml

Cites Work

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• Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.
• Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
• Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree
• Spectral analysis of phylogenetic data
• The distance matrix of a graph and its tree realization
• A few logs suffice to build (almost) all trees (I)

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