Spectral analysis of phylogenetic data
DOI10.1007/BF02638451zbMATH Open0772.92014OpenAlexW2069016054MaRDI QIDQ1801907FDOQ1801907
Authors: M. D. Hendy, David Penny 
Publication date: 17 August 1993
Published in: Journal of Classification (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/bf02638451
Recommendations
phylogenetic treenucleotide sequencesbipartitionHadamard conjugationedge weightsclosest tree selectionconjugate spectrumfast Hadamard transforminverse Hadamard conjugationleast squares best fitoptimality selection procedureprobabilities of state changesequence and distance datasequence spectrumtree spectrumtwo-state character sequencesunobserved changes in the dataweighted phylogenetic tree
Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Taxonomy, cladistics, statistics in mathematical biology (92B10) Computational methods for problems pertaining to biology (92-08)
Cites Work
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Cited In (23)
- Examining Protein Structure and Similarities by Spectral Analysis Technique
- Hadamard conjugation: an analytic tool for phylogenetics
- Embeddability and rate identifiability of Kimura 2-parameter matrices
- Analytic solutions for three taxon ML trees with variable rates across sites
- Analyzing and visualizing sequence and distance data using SPLITSTREE
- Bootstrapping phylogenetic trees: theory and methods
- Consistency and convergence rate of phylogenetic inference via regularization
- Do tree split probabilities determine the branch lengths?
- A Fourier inversion formula for evolutionary trees
- Remarks on Hadamard conjugation and combinatorial phylogenetics
- Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
- Spectral analysis and a closest tree method for genetic sequences
- Statistics for phylogenetic trees
- Spectral method for reconstructing phylogenetic tree
- Phylogenetic invariants for the general Markov model of sequence mutation
- Analysis of a data matrix and a graph: metagenomic data and the phylogenetic tree
- Phylogenetic invariants for stationary base composition
- Cases in which ancestral maximum likelihood will be confusingly misleading
- Analytic solutions of maximum likelihood on forks of four taxa
- Significance of the length of the shortest tree
- The link between segregation and phylogenetic diversity
- Invertibility of the TKF model of sequence evolution
- Toric geometry of the Cavender-Farris-Neyman model with a molecular clock
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