Embeddability and rate identifiability of Kimura 2-parameter matrices

DOI10.1007/s00285-019-01446-0zbMath1431.60074arXiv1902.08555OpenAlexW2988434190WikidataQ91199952 ScholiaQ91199952MaRDI QIDQ2299271

Jordi Roca-Lacostena, Jesús Fernández-Sánchez, Marta Casanellas

Publication date: 21 February 2020

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1902.08555

zbMATH Keywords

embedding problemMarkov matrixMarkov generatormatrix logarithmnucleotide substitution modelrate identifiability

Mathematics Subject Classification ID

Problems related to evolution (92D15) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Continuous-time Markov processes on discrete state spaces (60J27) Stochastic matrices (15B51) Matrix exponential and similar functions of matrices (15A16)

Related Items (8)

An open set of 4×4 embeddable matrices whose principal logarithm is not a Markov generator ⋮ Markov evolution algebras ⋮ Accessible Maps in a Group of Classical or Quantum Channels ⋮ On equal-input and monotone Markov matrices ⋮ The embedding problem for Markov matrices ⋮ Embeddability of centrosymmetric matrices capturing the double-helix structure in natural and synthetic DNA ⋮ The model-specific Markov embedding problem for symmetric group-based models ⋮ On monotone Markov chains and properties of monotone matrix roots

Uses Software

• mftoolbox

Cites Work

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