Embeddability of Kimura 3ST Markov matrices

DOI10.1016/j.jtbi.2018.02.005zbMath1397.92466arXiv1703.02263OpenAlexW2963096796WikidataQ49808384 ScholiaQ49808384MaRDI QIDQ1649397

Jesús Fernández-Sánchez, Jordi Roca-Lacostena

Publication date: 6 July 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1703.02263

zbMATH Keywords

eigenvaluesembeddabilityMarkov matrixMarkov generatorevolutionary model

Mathematics Subject Classification ID

Problems related to evolution (92D15) Genetics and epigenetics (92D10) Orthogonal matrices (15B10)

Related Items (7)

An open set of 4×4 embeddable matrices whose principal logarithm is not a Markov generator ⋮ The embedding problem for Markov matrices ⋮ Embeddability of centrosymmetric matrices capturing the double-helix structure in natural and synthetic DNA ⋮ The model-specific Markov embedding problem for symmetric group-based models ⋮ Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry ⋮ Embeddability and rate identifiability of Kimura 2-parameter matrices ⋮ Notes on Markov embedding

Uses Software

• SageMath
• mftoolbox

Cites Work

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• Phylogenetic ideals and varieties for the general Markov model
• Model Selection and Multimodel Inference
• Toric Ideals of Phylogenetic Invariants
• MULTIPLICATIVELY CLOSED MARKOV MODELS MUST FORM LIE ALGEBRAS
• Functions of Matrices
• On the Existence and Uniqueness of the Real Logarithm of a Matrix

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