Abstract: We introduce equivariant tree models in algebraic statistics, which unify and generalise existing tree models such as the general Markov model, the strand symmetric model, and group based models. We focus on the ideals of such models. We show how the ideals for general trees can be determined from the ideals for stars. The main novelty is our proof that this procedure yields the entire ideal, not just an ideal defining the model set-theoretically. A corollary of theoretical importance is that the ideal for a general tree is generated by the ideals of its flattenings at vertices.
Recommendations
Cites work
- scientific article; zbMATH DE number 3572315 (Why is no real title available?)
- scientific article; zbMATH DE number 1160038 (Why is no real title available?)
- scientific article; zbMATH DE number 3032538 (Why is no real title available?)
- Algebraic Statistics for Computational Biology
- Algebraic algorithms for sampling from conditional distributions
- Algebraic geometry of Bayesian networks
- Geometry of the Kimura 3-parameter model
- Invariants of some probability models used in phylogenetic inference
- On geometry of binary symmetric models of phylogenetic trees
- On the ideals and singularities of secant varieties of Segre varieties
- On the ideals of secant varieties of Segre varieties
- Phylogenetic algebraic geometry
- Phylogenetic ideals and varieties for the general Markov model
- The Strand Symmetric Model
- Toric Ideals of Phylogenetic Invariants
Cited in
(37)- Gorenstein property for phylogenetic trivalent trees
- Distance to the stochastic part of phylogenetic varieties
- Equivariant Hilbert series for hierarchical models
- Local equations for equivariant evolutionary models
- Lie-Markov models derived from finite semigroups
- When is a polynomial ideal binomial after an ambient automorphism?
- Gröbner bases for staged trees
- Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
- Tying up loose strands: defining equations of the strand symmetric model
- Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
- Rank conditions on phylogenetic networks
- A novel algebraic approach to time-reversible evolutionary models
- Embeddability of Kimura 3ST Markov matrices
- Relevant phylogenetic invariants of evolutionary models
- Uniformization Stable Markov Models and Their Jordan Algebraic Structure
- Invariants for level-1 phylogenetic networks under the Cavendar-Farris-Neyman model
- Finite phylogenetic complexity of \(\mathbb{Z}_p\) and invariants for \(\mathbb{Z}_3\)
- Phylogenetic invariants for \(\mathbb{Z}_3\) scheme-theoretically
- Multiplicatively closed Markov models must form Lie algebras
- Symmetric polynomials and nonfinitely generated \(\mathrm{Sym}(\mathbb{N})\)-invariant ideals
- Newton trees for ideals in two variables and applications
- Bounded-rank tensors are defined in bounded degree
- Geometry of phylogenetic group-based models
- Discovery of statistical equivalence classes using computer algebra
- Normality of the Kimura 3-Parameter Model
- Phylogenetic reconstruction based on algebra
- Generating Markov evolutionary matrices for a given branch length
- Lie Markov models
- Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants
- Dimensional reduction for the general Markov model on phylogenetic trees
- Brownian motion tree models are toric
- Lie Markov models with purine/pyrimidine symmetry
- Tensors of nonnegative rank two
- Arrangements, matroids and logarithmic vector fields. Abstracts from the workshop held June 16--21, 2024
- Phylogenetic complexity of the Kimura 3-parameter model
- Finiteness results for abelian tree models
- Low degree equations for phylogenetic group-based models
This page was built for publication: On the ideals of equivariant tree models
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1024193)
