Brownian motion tree models are toric

DOI10.14736/kyb-2020-6-1154OpenAlexW3118727831MaRDI QIDQ5858555

Caroline Uhler, Bernd Sturmfels, Piotr Zwiernik

Publication date: 13 April 2021

Published in: Kybernetika (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1902.09905

zbMATH Keywords

toric geometryultrametric matricesBrownian motion tree model

Mathematics Subject Classification ID

Positive matrices and their generalizations; cones of matrices (15B48) Probabilistic graphical models (62H22) Algebraic statistics (62R01)

Related Items (4)

Symmetrically Colored Gaussian Graphical Models with Toric Vanishing Ideals ⋮ Reciprocal Maximum Likelihood Degrees of Brownian Motion Tree Models ⋮ Nonlinear algebra and applications ⋮ Total positivity in multivariate extremes

Uses Software

• Macaulay2

Cites Work

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• Positivity for Gaussian graphical models
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• Toric degenerations of \(\mathrm{Gr}(2, n)\) and \(\mathrm{Gr}(3, 6)\) via plabic graphs
• Exponential varieties
• Schur complements of diagonally dominant matrices
• Maximum Likelihood Estimation for Linear Gaussian Covariance Models

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