Peeling phylogenetic `oranges'

DOI10.1016/J.AAM.2004.03.003MaRDI QIDQ705231zbMATH OpenOpenAlexFDO

Authors Vincent Moulton, Mike Steel

Publication date 26 January 2005

Published in Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/10092/12529

zbMATH Keywords

PosetPartitionsTreesContractibilityForests

Mathematics Subject Classification ID

Applications of graph theory (05C90) Problems related to evolution (92D15) Trees (05C05) Combinatorics of partially ordered sets (06A07) Topological spaces with richer structures (54E99)

Recommendations

• A regular decomposition of the edge-product space of phylogenetic trees
• The topology of spaces of phylogenetic trees with symmetry
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Cites work

• scientific article; zbMATH DE number 53152 (Why is no real title available?)
• scientific article; zbMATH DE number 1865935 (Why is no real title available?)
• scientific article; zbMATH DE number 863503 (Why is no real title available?)
• Complexes of directed trees
• Geometry of the space of phylogenetic trees
• Retractions of finite distance functions onto tree metrics
• Shellability of complexes of trees
• The complexity of reconstructing trees from qualitative characters and subtrees

Cited in

(15)

• Information geometry for phylogenetic trees
• Toric cubes
• Tree cumulants and the geometry of binary tree models
• Consistency and convergence rate of phylogenetic inference via regularization
• A graph-theoretical invariant of topological spaces
• The topology of spaces of phylogenetic trees with symmetry
• Shellability of face posets of electrical networks and the CW poset property
• Tropical optimal transport and Wasserstein distances
• Classifying tree topology changes along tropical line segments
• A smeary central limit theorem for manifolds with application to high-dimensional spheres
• Brownian motion tree models are toric
• A regular decomposition of the edge-product space of phylogenetic trees
• The edge-product space of phylogenetic trees is not shellable
• Wald space for phylogenetic trees
• Data analysis on nonstandard spaces

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