Finite phylogenetic complexity of Z_p and invariants for Z₃
Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Effectivity, complexity and computational aspects of algebraic geometry (14Q20) Markov processes: estimation; hidden Markov models (62M05) Problems related to evolution (92D15)
Roughly speaking, phylogenetics from an algebraic point of view consist to consider a Markov process on a tree \(T\) and a finite abelian group \(G\). \textit{B. Sturmfels} and \textit{S. Sullivant} [J. Comp. Biol. 12, 204--228 (2005; Zbl 1391.13058)] proved that by a suitable change of variables one associates a projective toric variety \(X(T , G)\). It is also proved that we can assume that the tree is a star \(K_{1,n}\). That is one node and \(n\) leaves.NEWLINENEWLINEIn the paper under review the author gives an explicit description of the variety \(X(K_{1,n} , G)\) and its associated polytope \(P_{n,G}\). Equations defining \(X(K_{1,n} , G)\), called Phylogenetic invariants, correspond to integral relations among vertices of \(P_{n,G}\). The main results in this paper are: The phylogenetic complexity of any group \({\mathbb Z}_p\), where \(p\) is a prime number, is finite, and as conjectured by Sturmfels and Sullivant, the phylogenetic complexity of \({\mathbb Z}_3\) equals 3.NEWLINENEWLINEIt is interesting to point the utilization of Combinatorial Nullstellensatz in the proofs.
- A generalization of combinatorial Nullstellensatz
- A short proof of combinatorial Nullstellensatz
- Algebraic Statistics for Computational Biology
- Bounded-rank tensors are defined in bounded degree
- Combinatorial Nullstellensatz
- Constructive degree bounds for group-based models
- Coordinate rings for the moduli stack of \(\mathrm{SL}(\mathbb C)\) quasi-parabolic principal bundles on a curve and toric fiber products
- Finiteness results for abelian tree models
- Geometry of phylogenetic group-based models
- H-representation of the Kimura-3 polytope for the m-claw tree
- Hilbert polynomial of the Kimura 3-parameter model
- scientific article; zbMATH DE number 835749 (Why is no real title available?)
- Introduction to Toric Varieties. (AM-131)
- Low degree equations for phylogenetic group-based models
- On geometry of binary symmetric models of phylogenetic trees
- On the graph labellings arising from phylogenetics
- On the ideals of equivariant tree models
- On the toric ideal of a matroid
- Phylogenetic algebraic geometry
- Phylogenetic invariants for \(\mathbb{Z}_3\) scheme-theoretically
- Phylogenetic invariants for group-based models
- Sagbi bases of Cox-Nagata rings
- The algebra of \(\mathrm{SL}_3(\mathbb{C})\) conformal blocks
- The quest for counterexamples in toric geometry
- Toric fiber products
- Toric geometry of the 3-Kimura model for any tree
- Toric Ideals of Phylogenetic Invariants
- Toric Ideals of Phylogenetic Invariants for the General Group-Based Model on Claw Trees K 1,n
- Toric varieties
- Toric varieties in phylogenetics
- Low degree equations for phylogenetic group-based models
- Phylogenetic diversity over an abelian group
- Gorenstein property for phylogenetic trivalent trees
- Toric varieties in phylogenetics
- Phylogenetic invariants for \(\mathbb{Z}_3\) scheme-theoretically
- Conformal blocks, Berenstein-Zelevinsky triangles, and group-based models
- Finite phylogenetic complexity and combinatorics of tables
- Geometry of phylogenetic group-based models
This page was built for publication: Finite phylogenetic complexity of \(\mathbb{Z}_p\) and invariants for \(\mathbb{Z}_3\)
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q326663)
