Geometry of phylogenetic group-based models
From MaRDI portal
Publication:663592
DOI10.1016/j.jalgebra.2011.05.016zbMath1251.14040arXiv1004.3012MaRDI QIDQ663592
Publication date: 25 February 2012
Published in: Journal of Algebra (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1004.3012
62P10: Applications of statistics to biology and medical sciences; meta analysis
92D15: Problems related to evolution
92B10: Taxonomy, cladistics, statistics in mathematical biology
14M25: Toric varieties, Newton polyhedra, Okounkov bodies
Related Items
Normality of the Kimura 3-Parameter Model, Finite phylogenetic complexity of \(\mathbb{Z}_p\) and invariants for \(\mathbb{Z}_3\), Phylogenetic invariants for \(\mathbb{Z}_3\) scheme-theoretically, On the graph labellings arising from phylogenetics, Phylogenetic complexity of the Kimura 3-parameter model, Dimensions of group-based phylogenetic mixtures, The model-specific Markov embedding problem for symmetric group-based models, Multigraded commutative algebra of graph decompositions, Lie Markov models with purine/pyrimidine symmetry, Computing images of polynomial maps, Low degree equations for phylogenetic group-based models, Local equations for equivariant evolutionary models, Gorenstein property for phylogenetic trivalent trees
Uses Software
Cites Work
- Sagbi bases of Cox-Nagata rings
- On the ideals of equivariant tree models
- Invariants of phylogenies in a simple case with discrete states
- Fourier calculus on evolutionary trees
- Invariants of some probability models used in phylogenetic inference
- Toric fiber products
- On geometry of binary symmetric models of phylogenetic trees
- Introduction to Toric Varieties. (AM-131)
- Toric Ideals of Phylogenetic Invariants
- Algebraic Statistics for Computational Biology
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