Phylogenetic algebraic geometry
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Publication:5487005
zbMATH Open1106.14050arXivmath/0407033MaRDI QIDQ5487005FDOQ5487005
Authors: Nicholas Eriksson, Kristian Ranestad, Bernd Sturmfels, Seth Sullivant 
Publication date: 18 September 2006
Full work available at URL: https://arxiv.org/abs/math/0407033
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Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Determinantal varieties (14M12) Computational aspects in algebraic geometry (14Q99)
Cited In (31)
- On geometry of binary symmetric models of phylogenetic trees
- Gorenstein property for phylogenetic trivalent trees
- Local equations for equivariant evolutionary models
- Rank functions of tropical matrices
- Dimensions of level-1 group-based phylogenetic networks
- When is a polynomial ideal binomial after an ambient automorphism?
- Toric Ideals of Phylogenetic Invariants
- Grassmann secants, identifiability, and linear systems of tensors
- Title not available (Why is that?)
- Secant varieties of toric varieties
- Phylogenetics of Indo-European language families via an algebro-geometric analysis of their syntactic structures
- Geometry of the Kimura 3-parameter model
- Implicit inequality constraints in a binary tree model
- Pure dimension and projectivity of tropical polytopes
- Finite phylogenetic complexity of \(\mathbb{Z}_p\) and invariants for \(\mathbb{Z}_3\)
- H-Representation of the Kimura-3 Polytope for the $m$-Claw Tree
- On the ideals of equivariant tree models
- Title not available (Why is that?)
- Conformal blocks, Berenstein-Zelevinsky triangles, and group-based models
- Multiplicative structure of \(2\times 2\) tropical matrices
- Geometry of phylogenetic group-based models
- On the dimension of higher secant varieties of Segre varieties \(\mathbb P^n \times \cdots \times \mathbb P^n\)
- Properties of cut ideals associated to ring graphs
- Dimension of tensor network varieties
- Entanglement invariants and phylogenetic branching
- Induction for secant varieties of Segre varieties
- Phylogenetic ideals and varieties for the general Markov model
- Topics on phylogenetic algebraic geometry
- Phylogenetic complexity of the Kimura 3-parameter model
- An implicitization challenge for binary factor analysis
- Decomposition Algorithms for Tensors and Polynomials
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