Phylogenetic algebraic geometry

zbMATH Open1106.14050MaRDI QIDQ5487005FDOQ5487005

Authors Nicholas Eriksson, Kristian Ranestad, Bernd Sturmfels, Seth Sullivant

Publication date 18 September 2006

Full work available at URL https://arxiv.org/abs/math/0407033

Mathematics Subject Classification ID

Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Determinantal varieties (14M12) Computational aspects in algebraic geometry (14Q99)

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Cited in

(32)

• First steps toward the geometry of cophylogeny
• Local equations for equivariant evolutionary models
• On geometry of binary symmetric models of phylogenetic trees
• Rank functions of tropical matrices
• Conformal blocks, Berenstein-Zelevinsky triangles, and group-based models
• On the dimension of higher secant varieties of Segre varieties \(\mathbb P^n \times \cdots \times \mathbb P^n\)
• Phylogenetic ideals and varieties for the general Markov model
• Geometry of phylogenetic group-based models
• H-representation of the Kimura-3 polytope for the \(m\)-claw tree
• Dimension of tensor network varieties
• Entanglement invariants and phylogenetic branching
• Decomposition Algorithms for Tensors and Polynomials
• Geometry of the Kimura 3-parameter model
• Implicit inequality constraints in a binary tree model
• Induction for secant varieties of Segre varieties
• Topics on phylogenetic algebraic geometry
• Secant varieties of toric varieties
• Dimensions of level-1 group-based phylogenetic networks
• Properties of cut ideals associated to ring graphs
• Gorenstein property for phylogenetic trivalent trees
• On the ideals of equivariant tree models
• Phylogenetics of Indo-European language families via an algebro-geometric analysis of their syntactic structures
• Multiplicative structure of \(2\times 2\) tropical matrices
• Toric Ideals of Phylogenetic Invariants
• Grassmann secants, identifiability, and linear systems of tensors
• Phylogenetic complexity of the Kimura 3-parameter model
• Pure dimension and projectivity of tropical polytopes
• Finite phylogenetic complexity of \(\mathbb{Z}_p\) and invariants for \(\mathbb{Z}_3\)
• scientific article; zbMATH DE number 4023094 (Why is no real title available?)
• When is a polynomial ideal binomial after an ambient automorphism?
• An implicitization challenge for binary factor analysis
• scientific article; zbMATH DE number 5247137 (Why is no real title available?)

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