Topics on phylogenetic algebraic geometry

DOI10.1016/J.EXMATH.2007.02.001MaRDI QIDQ2372154zbMATH OpenOpenAlexFDO

Authors Cristiano Bocci

Publication date 25 July 2007

Published in Expositiones Mathematicae (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.exmath.2007.02.001

zbMATH Keywords

algebraic statisticsphylogenetic inferencemolecular evolution

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of graph theory (05C90) Problems related to evolution (92D15) Trees (05C05) Surfaces and higher-dimensional varieties (14J99)

Recommendations

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• Toric Ideals of Phylogenetic Invariants
• Toric ideals of homogeneous phylogenetic models
• Toric varieties in phylogenetics
• Galois connections for phylogenetic networks and their polytopes

Cites work

• scientific article; zbMATH DE number 52497 (Why is no real title available?)
• scientific article; zbMATH DE number 3572315 (Why is no real title available?)
• scientific article; zbMATH DE number 1206418 (Why is no real title available?)
• scientific article; zbMATH DE number 1865935 (Why is no real title available?)
• Algebraic Statistics for Computational Biology
• Algebraic geometry of Bayesian networks
• Invariants of phylogenies in a simple case with discrete states
• Invariants of some probability models used in phylogenetic inference
• On the ideals of secant varieties of Segre varieties
• Phylogenetic ideals and varieties for the general Markov model
• Phylogenetic invariants for stationary base composition
• Phylogenetic invariants for the general Markov model of sequence mutation
• Ranks of tensors, secant varieties of Segre varieties and fat points
• Recovering a tree from the leaf colourations it generates under a Markov model
• The Mathematics of Phylogenomics
• The Strand Symmetric Model
• The empirical discovery of phylogenetic invariants
• Toric Ideals of Phylogenetic Invariants
• Toric ideals of homogeneous phylogenetic models

Cited in

(5)

• Ideals of varieties parameterized by certain symmetric tensors
• scientific article; zbMATH DE number 4023094 (Why is no real title available?)
• Phylogenetics of Indo-European language families via an algebro-geometric analysis of their syntactic structures
• Phylogenetic algebraic geometry
• Decomposition Algorithms for Tensors and Polynomials

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