Invariants for level-1 phylogenetic networks under the Cavendar-Farris-Neyman model
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Publication:6184907
DOI10.1016/J.AAM.2023.102633arXiv2102.03431OpenAlexW3127480614MaRDI QIDQ6184907FDOQ6184907
Authors: Joseph Cummings, Benjamin Hollering, Christopher Manon 
Publication date: 29 January 2024
Published in: Advances in Applied Mathematics (Search for Journal in Brave)
Abstract: Phylogenetic networks can model more complicated evolutionary phenomena that trees fail to capture such as horizontal gene transfer and hybridization. The same Markov models that are used to model evolution on trees can also be extended to networks and similar questions, such as the identifiability of the network parameter or the invariants of the model, can be asked. In this paper we focus on finding the invariants of the Cavendar-Farris-Neyman (CFN) model on level-1 phylogenetic networks. We do this by reducing the problem to finding invariants of sunlet networks, which are level-1 networks consisting of a single cycle with leaves at each vertex. We then determine all quadratic invariants in the sunlet network ideal which we conjecture generate the full ideal.
Full work available at URL: https://arxiv.org/abs/2102.03431
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Cited In (3)
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