Dimensions of group-based phylogenetic mixtures

DOI10.1007/s11538-018-0489-0zbMath1410.92071arXiv1711.08686OpenAlexW2768164968WikidataQ91500215 ScholiaQ91500215MaRDI QIDQ1736933

Xianqiang Yang

Publication date: 26 March 2019

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1711.08686

Mathematics Subject Classification ID

Problems related to evolution (92D15) Toric varieties, Newton polyhedra, Okounkov bodies (14M25)

Related Items (2)

Invariants for level-1 phylogenetic networks under the Cavendar-Farris-Neyman model ⋮ Identifiability in phylogenetics using algebraic matroids

Uses Software

• Macaulay2
• PhylogeneticTrees

Cites Work

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• Geometry of phylogenetic group-based models
• Evolutionary trees and the Ising model on the Bethe lattice: A proof of Steel's conjecture
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• Algebraic tools for evolutionary biology
• New examples of defective secant varieties of Segre-Veronese varieties
• Identifiability of 3-class Jukes-Cantor mixtures
• Invariants of some probability models used in phylogenetic inference
• A tropical approach to secant dimensions
• On geometry of binary symmetric models of phylogenetic trees
• A discrete Fourier analysis for evolutionary trees.
• Algebraic Statistics
• Toric Ideals of Phylogenetic Invariants
• H-Representation of the Kimura-3 Polytope for the $m$-Claw Tree

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