Distinguishing phylogenetic networks
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Publication:4564014
DOI10.1137/17M1134238zbMATH Open1392.92059arXiv1706.03060OpenAlexW2963525467MaRDI QIDQ4564014FDOQ4564014
Publication date: 12 June 2018
Published in: SIAM Journal on Applied Algebra and Geometry (Search for Journal in Brave)
Abstract: Phylogenetic networks are becoming increasingly popular in phylogenetics since they have the ability to describe a wider range of evolutionary events than their tree counterparts. In this paper, we study Markov models on phylogenetic networks and their associated geometry. We restrict our attention to large-cycle networks, networks with a single undirected cycle of length at least four. Using tools from computational algebraic geometry, we show that the semi-directed network topology is generically identifiable for Jukes-Cantor large-cycle network models.
Full work available at URL: https://arxiv.org/abs/1706.03060
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Cited In (21)
- Identifiability of local and global features of phylogenetic networks from average distances
- Identifiability of species network topologies from genomic sequences using the logDet distance
- When is a phylogenetic network simply an amalgamation of two trees?
- Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes
- Computing algebraic degrees of phylogenetic varieties
- Dimensions of level-1 group-based phylogenetic networks
- Identifying species network features from gene tree quartets under the coalescent model
- The model-specific Markov embedding problem for symmetric group-based models
- Identifiability in phylogenetics using algebraic matroids
- Classes of explicit phylogenetic networks and their biological and mathematical significance
- Rank conditions on phylogenetic networks
- Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution
- Exploring spaces of semi-directed level-1 networks
- Invariants for level-1 phylogenetic networks under the Cavendar-Farris-Neyman model
- Bounding the softwired parsimony score of a phylogenetic network
- Phylogenetic Networks
- Phylogenetic network dissimilarity measures that take branch lengths into account
- Boolean operators and neural networks
- The fine structure of galls in phylogenetic networks
- Phylogenetic networks that display a tree twice
- Identifiability of homoscedastic linear structural equation models using algebraic matroids
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